View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_low_18 (Length: 226)
Name: NF6741_low_18
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_18 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6272942 - 6273167
Alignment:
| Q |
1 |
tcaccttcatcatcggcattctctatttctcgtaaccgagcctccatcaccagcttacacaagtcatacaaacccttttctacaagcttatgtagatatt |
100 |
Q |
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| T |
6272942 |
tcaccttcatcatcggcattctctctttctcgtaaccgagcctccatcaccagcttacacaagtcatgcaaacccttttctacaagcttatgtagatatt |
6273041 |
T |
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| Q |
101 |
cagatgttgacacgtcggctgccaatctaatcatagtggagcataatctcttatatcgatgtgtactaaacagtttaggatcatcaacaacctcatttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6273042 |
cagatgttgacacgtcggctgccaatctaatcatagtggagcataatctcttatatcgatgtgtactaaacaatttaggatcatcaacaacctcatttcc |
6273141 |
T |
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| Q |
201 |
cctaatatcaaaaataacaccatcac |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6273142 |
cctaatatcaaaaataacaccatcac |
6273167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31641350 - 31641125
Alignment:
| Q |
1 |
tcaccttcatcatcggcattctctatttctcgtaaccgagcctccatcaccagcttacacaagtcatacaaacccttttctacaagcttatgtagatatt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31641350 |
tcaccttcatcattggcattctctatttctcgtaatcgagcctccatcaccagcttacacaagtcatacaaacccttttctacaagcttatgtagatatt |
31641251 |
T |
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| Q |
101 |
cagatgttgacacgtcggctgccaatctaatcatagtggagcataatctcttatatcgatgtgtactaaacagtttaggatcatcaacaacctcatttcc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31641250 |
cagatgttgacacgtcggctgccaatctaattatagtggcgcataatctcttatatcgatgtgttctaaacagtttaggatcatcaacaacctcatttcc |
31641151 |
T |
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| Q |
201 |
cctaatatcaaaaataacaccatcac |
226 |
Q |
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| T |
31641150 |
tctaatatcaaaaataacaccatcac |
31641125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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