View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6741_low_19 (Length: 221)

Name: NF6741_low_19
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6741_low_19
NF6741_low_19
[»] scaffold0356 (1 HSPs)
scaffold0356 (2-218)||(17433-17649)
[»] chr7 (8 HSPs)
chr7 (13-218)||(22844261-22844466)
chr7 (35-218)||(42232480-42232663)
chr7 (35-218)||(9000701-9000884)
chr7 (14-216)||(12780706-12780908)
chr7 (60-216)||(12785560-12785716)
chr7 (13-218)||(21069618-21069823)
chr7 (36-152)||(5828177-5828293)
chr7 (14-216)||(7037179-7037381)
[»] chr3 (10 HSPs)
chr3 (13-218)||(50410626-50410831)
chr3 (13-216)||(52918484-52918687)
chr3 (35-216)||(10968340-10968521)
chr3 (14-218)||(33230-33434)
chr3 (13-218)||(10111058-10111263)
chr3 (35-218)||(11369119-11369301)
chr3 (47-218)||(13530531-13530702)
chr3 (13-217)||(10000865-10001069)
chr3 (13-195)||(10238012-10238194)
chr3 (13-218)||(10039088-10039282)
[»] scaffold0118 (1 HSPs)
scaffold0118 (35-218)||(28275-28458)
[»] chr5 (13 HSPs)
chr5 (16-218)||(24629509-24629711)
chr5 (16-218)||(10025439-10025641)
chr5 (13-218)||(17871195-17871399)
chr5 (36-218)||(3690458-3690640)
chr5 (14-216)||(27881543-27881745)
chr5 (13-218)||(25542349-25542554)
chr5 (35-218)||(14192368-14192551)
chr5 (37-216)||(8428143-8428322)
chr5 (36-218)||(3876147-3876329)
chr5 (14-216)||(37373395-37373597)
chr5 (16-218)||(30346185-30346387)
chr5 (2-218)||(37261750-37261966)
chr5 (35-218)||(39883663-39883838)
[»] chr4 (6 HSPs)
chr4 (16-218)||(55558679-55558881)
chr4 (14-216)||(35856366-35856568)
chr4 (14-216)||(13337694-13337896)
chr4 (14-218)||(49710631-49710835)
chr4 (61-216)||(13344441-13344596)
chr4 (61-216)||(49786410-49786565)
[»] chr1 (8 HSPs)
chr1 (16-218)||(52501038-52501240)
chr1 (14-214)||(6310554-6310754)
chr1 (2-200)||(2452690-2452889)
chr1 (35-218)||(16042505-16042688)
chr1 (13-218)||(36207673-36207878)
chr1 (36-218)||(2329647-2329829)
chr1 (14-216)||(37389710-37389912)
chr1 (13-189)||(48774920-48775096)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-218)||(320892-321097)
[»] chr6 (5 HSPs)
chr6 (13-218)||(30881784-30881988)
chr6 (13-218)||(12517732-12517937)
chr6 (104-218)||(10188571-10188685)
chr6 (111-218)||(2200454-2200561)
chr6 (35-115)||(2201838-2201918)
[»] chr2 (11 HSPs)
chr2 (13-218)||(27192947-27193152)
chr2 (13-218)||(27842761-27842966)
chr2 (37-216)||(41919755-41919934)
chr2 (16-218)||(24268626-24268828)
chr2 (14-218)||(21395829-21396033)
chr2 (35-218)||(35610133-35610315)
chr2 (38-218)||(24246308-24246486)
chr2 (13-218)||(27509832-27510037)
chr2 (60-216)||(28665754-28665910)
chr2 (60-216)||(37824588-37824744)
chr2 (104-218)||(17683469-17683583)
[»] chr8 (5 HSPs)
chr8 (14-216)||(25218123-25218325)
chr8 (16-218)||(21113300-21113502)
chr8 (35-216)||(30325955-30326136)
chr8 (14-216)||(7822297-7822499)
chr8 (62-216)||(25208605-25208759)
[»] scaffold0262 (1 HSPs)
scaffold0262 (13-218)||(19463-19668)
[»] scaffold0134 (1 HSPs)
scaffold0134 (14-218)||(4816-5020)
[»] scaffold1139 (1 HSPs)
scaffold1139 (36-218)||(1498-1680)
[»] scaffold0003 (2 HSPs)
scaffold0003 (36-218)||(183292-183474)
scaffold0003 (36-120)||(166014-166098)
[»] scaffold0073 (2 HSPs)
scaffold0073 (13-218)||(32390-32595)
scaffold0073 (14-216)||(210-412)
[»] scaffold0017 (1 HSPs)
scaffold0017 (13-218)||(187012-187215)
[»] scaffold0225 (1 HSPs)
scaffold0225 (13-218)||(13833-14038)
[»] scaffold0107 (1 HSPs)
scaffold0107 (14-218)||(42434-42638)
[»] scaffold0090 (1 HSPs)
scaffold0090 (60-216)||(48518-48674)
[»] scaffold0550 (1 HSPs)
scaffold0550 (36-218)||(124-310)


Alignment Details
Target: scaffold0356 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 17649 - 17433
Alignment:
Q  2 aatagcttccggaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatc 101  Q
    ||||||| || |||||||||||  ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17649 aatagctgcctgaaatcaccacataaaactcttgtcattccacggaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatc 17550  T
Q  102 gatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  17549 gatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttc 17450  T
Q  202 cattgtaagcgatgatg 218  Q
    |||||||||||||||||    
T  17449 cattgtaagcgatgatg 17433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 22844261 - 22844466
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22844261 gaaatcaccacctaaaacttttgtctttccaccaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 22844360  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| |  || ||||||| ||||||||||||||||||||||| || |||||||    
T  22844361 tcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgctacatgcaccaggtcttccctaggactatccttttcaatcgtaagcg 22844460  T
Q  213 atgatg 218  Q
    ||||||    
T  22844461 atgatg 22844466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 42232480 - 42232663
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  42232480 gtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatca 42232579  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
     ||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  42232580 atggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 42232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 9000884 - 9000701
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  9000884 gtcattccaccaaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatca 9000785  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||||||||||||| |||| ||||| ||||||||| ||| ||| ||||||||||||||||||||||  ||||||||||||    
T  9000784 ttggagcctcatcccaaattatcaactttgcagcacgcatcaggtctgccctaggactatccttttccatcttaagcgatgatg 9000701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 12780908 - 12780706
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| || | |||||||||| ||||||| |||   ||||||||||||||||||||||||||||||||  || ||||||  |||||||||    
T  12780908 aaatcaccacctaaaactattgtcattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcaaacaatgatcggacaactgcct 12780809  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||  |||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  12780808 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgtagcacgcaccaggtctgccctaggactatccttttccatcgtaagcga 12780709  T
Q  214 tga 216  Q
    |||    
T  12780708 tga 12780706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 12785716 - 12785560
Alignment:
Q  60 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcga 159  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  12785716 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 12785617  T
Q  160 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||| |||||| |||||| ||| ||| |||||||||||||||||| |||||||||||    
T  12785616 ctttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 12785560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 21069823 - 21069618
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||    
T  21069823 gaaatcaccacctaaaactactgtgattccaccaaatggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgaccgatgaaatgcc 21069724  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||  | ||||||||||||||| | | ||| |||| | ||| ||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  21069723 tcaaaacaccatcaatacatcattggagcctcgttcgaaattatcaagtttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcg 21069624  T
Q  213 atgatg 218  Q
    ||||||    
T  21069623 atgatg 21069618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 5828293 - 5828177
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcat 135  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  5828293 tcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacacattgatcgatcaactgcctcaaaacaccatcagtgcatcat 5828194  T
Q  136 tggagcctcatcccaaa 152  Q
    |||||||||||||||||    
T  5828193 tggagcctcatcccaaa 5828177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 7037179 - 7037381
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| |||   |||||| ||||||||||||| ||||||||||||| | |||||| |||||| |||    
T  7037179 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagtgcgtttaagggatcattcttgaacatgatatcacgtaatgatcggtcaactacct 7037278  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||| |||||||||||||||||||| |||||| |||| ||||| ||||| |||  || ||| |||||||||||||||||||||| ||||||||    
T  7037279 caaaacaccattggtgcatcattggagcctcaccccaaattatcaactttgcagcatgcattaggtctgccctaggactatccttttccatcgtaagcga 7037378  T
Q  214 tga 216  Q
    |||    
T  7037379 tga 7037381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 50410626 - 50410831
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  50410626 gaaatcaccacctaaaactactgtcattccacgaaaaggtataaactcgtttaggggatcattcttggacatgatatcacacattgatcggtcaactgcc 50410725  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||| |||||||||||||||||||||| |||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  50410726 tcaaaacaccattggtgcatcattggagcctcatcacaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcg 50410825  T
Q  213 atgatg 218  Q
    ||||||    
T  50410826 atgatg 50410831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 52918484 - 52918687
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  52918484 gaaatcaccacctaaaactactgtcattccaccaaaaggtctaaacttgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcc 52918583  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  52918584 tcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctaccctaggattatccttttccatcgtaagcg 52918683  T
Q  213 atga 216  Q
    ||||    
T  52918684 atga 52918687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 10968521 - 10968340
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  10968521 gtcattccaccaaaaggtctaaaatcgtttaggggatcattcttggacctgatatcatgcattgatcggtcaactgcctcaaaacaccatcggtgcatca 10968422  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  10968421 ttggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 10968340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 33230 - 33434
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| || | |||||||||| ||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  33230 aaatcaccacctaaaactattgtcattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 33329  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  33330 caaaacaccatcggtgcatcatcggagcctcatcccaaattatcaactatgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcga 33429  T
Q  214 tgatg 218  Q
    |||||    
T  33430 tgatg 33434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 10111058 - 10111263
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | |||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||    
T  10111058 gaaatcaccacctaaaactattgtcattccatcaaatggtttaaactcgtttagggaatcattcttggacatgataccacacattgatcggtcaactgcc 10111157  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||||||  ||| |||||||||||||||||||||| ||||| |    
T  10111158 tcaaaacaccatcagtgcatcattagagcctcatcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagag 10111257  T
Q  213 atgatg 218  Q
    ||||||    
T  10111258 atgatg 10111263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 11369119 - 11369301
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  11369119 gtcattccaccaaaaggtctaaactcgtataggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacaccatcggtgcatca 11369218  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||||||||||||| |||| |||||  |||| ||||||| || | |||||||||||||||||||||  ||||||||||||    
T  11369219 ttggagcctcatcccaaattatcaactttgaagcatgcaccaggtc-tgcctaggactatccttttccatcttaagcgatgatg 11369301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 13530531 - 13530702
Alignment:
Q  47 aaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||| ||||| ||||||| ||    
T  13530531 aaaggtctaaactcgtttaggggatcattcttggacatgatatgacgcattgatcggtcaactgtctcaaaacaccattggtgtatcatcggagccttat 13530630  T
Q  147 cccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||| |||| ||||| ||||||||||||| ||| ||||||||||||||||||| || |||||||||||||    
T  13530631 cccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttctatcgtaagcgatgatg 13530702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 10000865 - 10001069
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||| ||||| ||| || | |||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||    
T  10000865 gaaatccccacctaaaactattgtcattccatcaaatggtttaaactcgtttagggaatcattcttggacatgataccacacattgatcggtcaactgcc 10000964  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||||||  ||| |||||||||||||||||||||| ||||| |    
T  10000965 tcaaaacaccatcagtgcatcattagagcctcatcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagag 10001064  T
Q  213 atgat 217  Q
    |||||    
T  10001065 atgat 10001069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 10238012 - 10238194
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | |||||||||  ||| ||| ||||||||||||||| ||||||| ||||||||||| ||| ||||||||| |||||||||    
T  10238012 gaaatcaccacctaaaactattgtcattccatcaaatggtttaaactcgtttagggaatcattcctggacatgataccacacattgatcggtcaactgcc 10238111  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatc 195  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||    
T  10238112 tcaaaacaccatcagtgcatcattagagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatc 10238194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 10039088 - 10039282
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||  ||| || | |||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||  |||||| ||    
T  10039088 gaaatcaccacataaaactattgtcattccaccaaaaggtctaaactcgtttaagggatcattcctagacatgatatcacgcattgatcagtcaacttcc 10039187  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||| ||           |||||||||| ||||||||| |||| | ||| ||| ||||||||| ||| ||||| |||||||||| ||||  |||||||    
T  10039188 tcaaaagac-----------cattggagccccatcccaaattatcaattttacagtacgcaccaggtctgccctatgactatccttctccagcgtaagcg 10039276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 28458 - 28275
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  28458 gtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatca 28359  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
     ||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  28358 atggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 28275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 24629711 - 24629509
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  24629711 atcaccacctaaaactattgtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcggccaactgcctca 24629612  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  24629611 aaacaccatcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcatcaggtcttccctaggactatccttttccatcgtaagcgatg 24629512  T
Q  216 atg 218  Q
    |||    
T  24629511 atg 24629509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 10025439 - 10025641
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10025439 atcaccacctaaaactattgtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctca 10025538  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||| |||||||||| || ||| ||| |||||||||||||||||| ||||||||||    
T  10025539 aaacaccatcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcactaggtctgccccaggactatccttttccatcgtaagcgatg 10025638  T
Q  216 atg 218  Q
    |||    
T  10025639 atg 10025641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 17871399 - 17871195
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17871399 gaaatcaccacctaaaacttttgtctttccaccaaaaggtctaaactcgtttaggggatcattcttggacatgatat-acgcattgatcgatcaactgcc 17871301  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||||||||||||||||||||||| ||| | |||| ||||| |  || ||||||  |||||||||||||||||||||||||| |||||||    
T  17871300 tcaaaacaccatcggtgcatcattggagcctcattccatattatcaacttttctacatgcaccatgtcttccctaggactatccttttccatcgtaagcg 17871201  T
Q  213 atgatg 218  Q
    ||||||    
T  17871200 atgatg 17871195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 3690458 - 3690640
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcat 135  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| ||||||    
T  3690458 tcattccaccaaaaggtctaaactcgtttaggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacaccatcggttcatcat 3690557  T
Q  136 tggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    ||||||||||||||||| |||| ||||| ||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  3690558 tggagcctcatcccaaattatcaactttgcagcaggcaccaggtctgccctaggactatccttttccatcgtaagtgatgatg 3690640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 27881543 - 27881745
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  27881543 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 27881642  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||| | | |||||||||||||||||||||| ||||||||    
T  27881643 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcatcaggtttgccctaggactatccttttccatcgtaagcga 27881742  T
Q  214 tga 216  Q
    |||    
T  27881743 tga 27881745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 25542554 - 25542349
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||    
T  25542554 gaaatcaccacctaaaactactgtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattaatcggtcaacttcc 25542455  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||| |||||||||||||||||||||  ||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  25542454 tcaaaacaccatcagtgcatcattggagcctcatcttaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcg 25542355  T
Q  213 atgatg 218  Q
    ||||||    
T  25542354 atgatg 25542349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 14192551 - 14192368
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttagggg-atcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatc 133  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |    
T  14192551 gtcattccaccaaaaggtctaaactcgtttagggggatcattcttggacatgatatcacgcattgatcggtcaattgcttcaaaacaccatcggtgca-c 14192453  T
Q  134 attggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  14192452 attggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagtgatgatg 14192368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 8428322 - 8428143
Alignment:
Q  37 cattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcatt 136  Q
    |||||||| ||||||| |||   |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||    
T  8428322 cattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcatt 8428223  T
Q  137 ggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  8428222 ggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 8428143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 3876329 - 3876147
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcat 135  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||| ||||||| ||||||    
T  3876329 tcattccaccaaaaggtctaaactcgtttaggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacatcatcggttcatcat 3876230  T
Q  136 tggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    ||||||||||||||||| |||| ||||| ||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  3876229 tggagcctcatcccaaattatcaactttgcagcaggcaccaggtctgccctaggactatccttttccatcgtaagtgatgatg 3876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 37373395 - 37373597
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   || ||||||| ||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  37373395 aaatcaccacctaaaactactgtgattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 37373494  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  37373495 caaaacaccatcggtgcatcattggagtctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcga 37373594  T
Q  214 tga 216  Q
    |||    
T  37373595 tga 37373597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 30346387 - 30346185
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  30346387 atcaccacctaaaactattgtcattccaccaaatagtttaaactcgtttaggggatcaatcttggacatgatatcacgcattgatcggtcaactgcctca 30346288  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||| ||||||||||| |||| ||||| ||||||||| ||| ||| |||||||||||||||||||||| ||||| ||||    
T  30346287 aaacaccatcagtgcatcaatggagtctcatcccaaattatcaactttgcagcacgcatcaggtctgccctaggactatccttttccatcgtaagtgatg 30346188  T
Q  216 atg 218  Q
    |||    
T  30346187 atg 30346185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 37261750 - 37261966
Alignment:
Q  2 aatagcttccggaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatc 101  Q
    |||| ||||| |||||||||||  ||| || | ||||||||||  |||||||||||||||||||  ||||||||| | ||||||||||| ||||||||||    
T  37261750 aatatcttcctgaaatcaccacataaaactattgtcattccaccgaaaggtctaaactcgtttaaaggatcattcctagacatgatatcgcgcattgatc 37261849  T
Q  102 gatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttc 201  Q
      |||||| |||||||||||||||  ||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||  ||||||||||||||||||    
T  37261850 agtcaacttcctcaaaacaccatcaatgcatcattggagcctcatcccaaattatcaactttacagcacgcaccaggtctgtcctaggactatccttttc 37261949  T
Q  202 cattgtaagcgatgatg 218  Q
    ||| |||||| ||||||    
T  37261950 catcgtaagcaatgatg 37261966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 39883663 - 39883838
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||||||| ||| | ||||||||||||||||||||||||||        || |||||| ||| |||||||||||||||||||||||||||    
T  39883663 gtcattccaccaaaaggtttaagcgcgtttaggggatcattcttggacatg--------caatgatcggtcagctgcctcaaaacaccatcggtgcatca 39883754  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||||||||||||| ||||  |||| ||||||||||||| ||| || ||||||||||||||||||| |||||||||||||    
T  39883755 ttggagcctcatcccaaattatcagctttgcagcacgcaccaggtctgccttaggactatccttttccatcgtaagcgatgatg 39883838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 55558881 - 55558679
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  55558881 atcaccacctaaaactattgtcattccaccaaatggtttaaactcgtttaggggatcatttttggacatgatatcacgcattgatcggtcaactgcctca 55558782  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  55558781 aaacaccatcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatg 55558682  T
Q  216 atg 218  Q
    |||    
T  55558681 atg 55558679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 35856366 - 35856568
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  35856366 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 35856465  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  35856466 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcga 35856565  T
Q  214 tga 216  Q
    |||    
T  35856566 tga 35856568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 13337694 - 13337896
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| |||    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  13337694 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagtgtgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 13337793  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  13337794 caaaccaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcga 13337893  T
Q  214 tga 216  Q
    |||    
T  13337894 tga 13337896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 49710631 - 49710835
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| || | ||||||||||  |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  49710631 aaatcaccacctaaaactattgtcattccaccgaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 49710730  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||||| || ||| |||||||||||||||||| |||  |||||||    
T  49710731 caaaacaccatcgatgcatcattggagcctcatcccaaattatcaactttgcagcacgcacaaggtctgccctaggactatccttttgcatcttaagcga 49710830  T
Q  214 tgatg 218  Q
    |||||    
T  49710831 tgatg 49710835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 13344441 - 13344596
Alignment:
Q  61 gtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgac 160  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||    
T  13344441 gtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaccaccatcggtgcatcattggagcctcatcccaaattatcaac 13344540  T
Q  161 tttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    ||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  13344541 tttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 13344596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 49786565 - 49786410
Alignment:
Q  61 gtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgac 160  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  49786565 gtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaac 49786466  T
Q  161 tttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    ||| |||||| |||||| ||| ||| |||||||||||||||||| |||||||||||    
T  49786465 tttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 49786410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 52501038 - 52501240
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  52501038 atcaccacctaaaactattgtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcggccaactgcctca 52501137  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  52501138 aaacaccatcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcatcaggtcttccctaggactatccttttccatcgtaagcgatg 52501237  T
Q  216 atg 218  Q
    |||    
T  52501238 atg 52501240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 6310754 - 6310554
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| || | ||| |||||| ||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  6310754 aaatcaccacctaaaactattgtcgttccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 6310655  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||| ||| ||| |||||||||||||||||||||| ||||||||    
T  6310654 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcatgcatcaggtctgccctaggactatccttttccatcgtaagcga 6310555  T
Q  214 t 214  Q
    |    
T  6310554 t 6310554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 2452889 - 2452690
Alignment:
Q  2 aatagcttccggaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatc 101  Q
    |||| ||||| |||||||||||| ||| ||   |||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  2452889 aatatcttcctgaaatcaccacctaaaactactgtcattccaccaaaagttctaaactcgtttaaggggtcattcttggacatgatatcacacattgatc 2452790  T
Q  102 gatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttct-tccctaggactatcctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||| |||  ||||||||||||||||||    
T  2452789 gatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaacattacagcacgcaccaggtctgcccctaggactatcctttt 2452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 16042505 - 16042688
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||| || |||||  ||| |||||||||||||||||||||||||||    
T  16042505 gtcattccaccaaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacacaatgatcagtcagctgcctcaaaacaccatcggtgcatca 16042604  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    || ||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  16042605 tttgagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 16042688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 36207673 - 36207878
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||  |||||||||    
T  36207673 gaaatcaccacctaaaactactgtcattccaccaaaaggtctaaactcatttaagggatcattcttggacatggtatcacacattgatcagtcaactgcc 36207772  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||  |||||| ||||||||||||||||||| |||| || || ||||||||||||| ||| |||||||||||| ||||||||| |||||||    
T  36207773 tcaaaacaccattagtgcatgattggagcctcatcccaaattatcaacgttgcagcacgcaccaggtctaccctaggactattcttttccatcgtaagcg 36207872  T
Q  213 atgatg 218  Q
    ||||||    
T  36207873 atgatg 36207878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 2329647 - 2329829
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcat 135  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||  ||||||||||||| ||||||||||    
T  2329647 tcattccacgaaaaggtctaaacttgtttaggggatcattcttggacatgatatcacacattgatcggtaaactttctcaaaacaccattggtgcatcat 2329746  T
Q  136 tggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    ||||| |||||   ||| |||| ||||| |||||| |||||| ||| |||||||||| ||||||||||| |||||||||||||    
T  2329747 tggagactcataaaaaattatcaactttgcagcacacaccaggtctgccctaggactgtccttttccatagtaagcgatgatg 2329829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 37389912 - 37389710
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| || | |||||||||| ||||||| |||   |||||| |||||||||||||| |||||||||||||| |||| | ||||||||||    
T  37389912 aaatcaccacctaaaactattgtcattccaccaaaaggtttaagtgcgtttaagggatcattcttggccatgatatcacgcaatgattggtcaactgcct 37389813  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||  || |||||||||| ||||||||||| |||| ||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  37389812 caaaacaccatcattgtatcattggagtctcatcccaaattatcaactttgcagcacgcaccaggtctgccctgggactatccttttccattgtaagcga 37389713  T
Q  214 tga 216  Q
    |||    
T  37389712 tga 37389710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 48775096 - 48774920
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| | ||||||||     
T  48775096 gaaatcaccacctaaaactaccgtcattcctccaaaaggtctaaactcgtttaagggatcattcttggatatgatatcatgcattgattggtcaactgct 48774997  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctagg 189  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||  |||||||||||| ||| |||||||    
T  48774996 tcaaaacaccatcggtgcatcattggagcctcatcacaaattatcaactttgaagcacgcaccaggtctgccctagg 48774920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 321097 - 320892
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| |||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  321097 gaaatcaccacctaaaactcttgtcattccaccaaaaggtctaaagttgtttaggggatcattcttggacatgatatcacccattgatcgatcaaatgcc 320998  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||| || |||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||| ||   |||||    
T  320997 tcaaaacaccatcgatgtatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtcttccctaggactatccttttctatcacaagcg 320898  T
Q  213 atgatg 218  Q
    ||||||    
T  320897 atgatg 320892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 30881784 - 30881988
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30881784 gaaatcaccacctaaaacttttgtctttccaccaaaaggtctaaactcgtttaggggatcattcttggacatgatat-acgcattgatcgatcaactgcc 30881882  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||||||||||||||||||||||| ||| | |||| ||||| |  || ||||||| |||||||||||||||||||||||||| |||||||    
T  30881883 tcaaaacaccatcggtgcatcattggagcctcattccatattatcaacttttctacatgcaccaggtcttccctaggactatccttttccatcgtaagcg 30881982  T
Q  213 atgatg 218  Q
    ||||||    
T  30881983 atgatg 30881988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 12517732 - 12517937
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| ||||||| ||| | ||||||| ||||||||||||||||||||||||| || |||||| ||| |||||    
T  12517732 gaaatcaccacctaaaactactgtcattccaccaaaaggtttaagcgcgtttagaggatcattcttggacatgatatcacacaatgatcggtcagctgcc 12517831  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||   || ||||||||||||| |||||||| |||||||    
T  12517832 tcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccatgcctgccctaggactatcattttccatcgtaagcg 12517931  T
Q  213 atgatg 218  Q
    ||||||    
T  12517932 atgatg 12517937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 10188571 - 10188685
Alignment:
Q  104 tcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttcca 203  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||| ||| ||||| |||||||||||||||    
T  10188571 tcaactgcctcaaaacaccattggtgcatcattagagcctcattccaaattatcaactttgcagcacgcaccaggtctgccctacgactatccttttcca 10188670  T
Q  204 ttgtaagcgatgatg 218  Q
    | |||||||||||||    
T  10188671 tcgtaagcgatgatg 10188685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 2200561 - 2200454
Alignment:
Q  111 cctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaag 210  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  2200561 cctcaaaacactatcggtgcatcattggagcctcattccaaattatcaactttgcagcacgcaccaggtctcccctaggactatctttttccatcgtaag 2200462  T
Q  211 cgatgatg 218  Q
    ||||||||    
T  2200461 cgatgatg 2200454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 2201918 - 2201838
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2201918 gtcattccaccaaaaggtctaaactcgtttagggggtcattcttggacatgatatcacgctttgatcggtcaactgcctca 2201838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 27192947 - 27193152
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  27192947 gaaatcaccacctaaaactattgtcattccaccaaaaggtctaaactcgtttaggggatcattcttgtacatgatataacgcattgatcggtcaactgcc 27193046  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||| ||  ||||||||||||||||||||||  ||||||    
T  27193047 tcaaagcaccatcggtgcatcattggagcctcatcccaaattatcaattttgcagcacgcaccaggtcagccctaggactatccttttccatcataagcg 27193146  T
Q  213 atgatg 218  Q
    ||||||    
T  27193147 atgatg 27193152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 27842761 - 27842966
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  27842761 gaaatcaccacctaaaactattgtcattccaccaaaaggtctaaactcgtttaggggatcattcttgtacatgatataacgcattgatcggtcaactgcc 27842860  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||| ||  ||||||||||||||||||||||  ||||||    
T  27842861 tcaaagcaccatcggtgcatcattggagcctcatcccaaattatcaattttgcagcacgcaccaggtcagccctaggactatccttttccatcataagcg 27842960  T
Q  213 atgatg 218  Q
    ||||||    
T  27842961 atgatg 27842966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 41919934 - 41919755
Alignment:
Q  37 cattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcatt 136  Q
    |||||||| ||||||| |||   |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||    
T  41919934 cattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcatt 41919835  T
Q  137 ggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  41919834 ggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 41919755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 24268828 - 24268626
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24268828 atcaccacctaaaactattgtcattccaccaaatggtttaaacttgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctca 24268729  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||| ||||| ||||||| |||  |||||||||||| |||||||| ||||||||||    
T  24268728 aaacaccatcagtgcatcagtggagcctcatcccaaattatcaactttgcagcatgcaccaggtctgtcctaggactatcattttccatcgtaagcgatg 24268629  T
Q  216 atg 218  Q
    |||    
T  24268628 atg 24268626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 21395829 - 21396033
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||  ||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  21395829 aaatcaccacctaaaactacggtcattccaccaaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaacagcct 21395928  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||  ||| |||||||||||||||||  |||  |||||||    
T  21395929 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatcctttagcatcttaagcga 21396028  T
Q  214 tgatg 218  Q
    |||||    
T  21396029 tgatg 21396033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 35610133 - 35610315
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||| ||    
T  35610133 gtcattctaccaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgtattgatcggtcaattgcttcaaaacaccatcggtgca-ca 35610231  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| ||| || ||||||||||||||||||| ||||| |||||||    
T  35610232 ttggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccttaggactatccttttccatcgtaagtgatgatg 35610315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 24246308 - 24246486
Alignment:
Q  38 attccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattg 137  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||    
T  24246308 attccaccaaaaggtctaaactcatttaggggatcattcttggacatgatatcacgtattgatcggtcaactgcctcaaaataccatcagtgcatcattg 24246407  T
Q  138 gagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||||  |||| |||| ||||| ||||||||||||  ||| |||||||||||||||||||||| |||||||||||||    
T  24246408 gagcctcat--caaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagcgatgatg 24246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 27509832 - 27510037
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27509832 gaaatcaccacctaaaactactgtcattccaccaaaatgtctaaactcatttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcc 27509931  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||| ||||| ||||| ||||||| ||| ||||||| || ||||||| ||| ||||||     
T  27509932 tcaaaacaccatcggtgcatcattgaagcctcatcctaaattatcaactttgcagcatgcaccagatctgccctaggtctgtccttttgcatcgtaagca 27510031  T
Q  213 atgatg 218  Q
    ||||||    
T  27510032 atgatg 27510037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 28665910 - 28665754
Alignment:
Q  60 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcga 159  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  28665910 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 28665811  T
Q  160 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||| |||||| |||||| ||| ||| |||||||||||||||||| |||||||||||    
T  28665810 ctttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 28665754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 37824744 - 37824588
Alignment:
Q  60 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcga 159  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  37824744 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 37824645  T
Q  160 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||| |||||| |||||| ||| ||| |||||||||||||||||| |||||||||||    
T  37824644 ctttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 37824588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 17683583 - 17683469
Alignment:
Q  104 tcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttcca 203  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||| ||| ||||| |||||||||||| ||    
T  17683583 tcaactgcctcaaaacaccattggtgcatcattagagcctcattccaaattatcaactttgcagcacgcaccaggtctgccctacgactatcctttttca 17683484  T
Q  204 ttgtaagcgatgatg 218  Q
    | |||||||||||||    
T  17683483 tcgtaagcgatgatg 17683469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 25218325 - 25218123
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  25218325 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 25218226  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  25218225 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcga 25218126  T
Q  214 tga 216  Q
    |||    
T  25218125 tga 25218123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 21113502 - 21113300
Alignment:
Q  16 atcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 115  Q
    ||||||||| ||| || | |||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  21113502 atcaccacctaaaactattgtcattccaccaaatggtttaaacttgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgccgca 21113403  T
Q  116 aaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatg 215  Q
    |||||||||| |||||||| ||||||||||||||||| |||| ||||| ||||||||||||| |||  ||||||||||||||||||||| ||||||||||    
T  21113402 aaacaccatcagtgcatcaatggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgtcctaggactatccttttccatcgtaagcgatg 21113303  T
Q  216 atg 218  Q
    |||    
T  21113302 atg 21113300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 30325955 - 30326136
Alignment:
Q  35 gtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatca 134  Q
    |||||||||| ||||||| |||   |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  30325955 gtcattccaccaaaaggtttaagtgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatca 30326054  T
Q  135 ttggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||||||||||||||||| |||| ||||| ||||| ||||||| ||| ||||||||||||| |||||||| |||||||||||    
T  30326055 ttggagcctcatcccaaattatcaactttgcagcatgcaccaggtctgccctaggactatcattttccatcgtaagcgatga 30326136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 7822297 - 7822499
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| |||    ||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||    
T  7822297 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagtgtgtttaggggatcatttttggacatgatatcatgcaatgatcggtcaactgcct 7822396  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||||| || ||| | ||||||    
T  7822397 caaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatcctctttcatcgcaagcga 7822496  T
Q  214 tga 216  Q
    |||    
T  7822497 tga 7822499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 25208759 - 25208605
Alignment:
Q  62 tttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgact 161  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  25208759 tttaggggatcattcttggacatgatatcacacaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagtctcatcccaaattatcaact 25208660  T
Q  162 ttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    ||  |||||||| ||| ||| |||||||||| ||||||||||| |||||||||||    
T  25208659 ttggagcacgcatcaggtctgccctaggactttccttttccatcgtaagcgatga 25208605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 19463 - 19668
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    ||||| |||||| ||| || | |||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19463 gaaattaccacctaaaactattgtcattccaccaaatgatttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcc 19562  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||  |||| |||||||||||||||| |||||||    
T  19563 tcaaaacaccatcagtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgacctaagactatccttttccatcgtaagcg 19662  T
Q  213 atgatg 218  Q
    ||||||    
T  19663 atgatg 19668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 5020 - 4816
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||| | ||| || | |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  5020 aaatcaccatctaaaactattgtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcatgcattgatcggtcaactgcct 4921  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    |||||||||||| ||||||||||||| |||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||||||||| || ||||||||    
T  4920 caaaacaccatcagtgcatcattggatcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttctatcgtaagcga 4821  T
Q  214 tgatg 218  Q
    |||||    
T  4820 tgatg 4816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 1498 - 1680
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcat 135  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1498 tcattccaccaaaaggtctaaactcgtttaggggatcattattggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcggtgcatcat 1597  T
Q  136 tggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    | |||||||| || ||| |||  ||||| ||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||    
T  1598 ttgagcctcaaccaaaattattaactttgcagcacgcaccaggtctgccctaggactatcctttttcattttaagcgatgatg 1680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 183292 - 183474
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcat 135  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| ||||||    
T  183292 tcattccaccaaaaggtctaaactcgtttaggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacaccatcggtacatcat 183391  T
Q  136 tggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||| |||||||| |||  ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  183392 tggagcctaatcccaaattattaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 183474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 166014 - 166098
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaaca 120  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | |||||||||||||||||    
T  166014 tcattccaccaaaaggtctaaactcgtttaggtgatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaaca 166098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 32390 - 32595
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| ||||||| ||| | |||||| |||||| | |||||||||||||||||||| |||||| ||| |||||    
T  32390 gaaatcaccacctaaaactactgtcattccaccaaaaggtttaagcgcgtttacgggatcgtgcttggacatgatatcacgcaatgatcggtcagctgcc 32489  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  32490 tcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaggtctgccctaagactatccttttccattgtaagcg 32589  T
Q  213 atgatg 218  Q
    ||||||    
T  32590 atgatg 32595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 210 - 412
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| |||   |||||| ||||||||||||| ||||||||||||| | |||||| |||||| |||    
T  210 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagtgcgtttaagggatcattcttgaacatgatatcacgtaatgatcggtcaactacct 309  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    ||||||||||| |||||||||||||||||||| |||||| |||| ||||| ||||| |||  || ||| |||||||||||||||||||||| ||||||||    
T  310 caaaacaccattggtgcatcattggagcctcaccccaaattatcaactttgcagcatgcattaggtctgccctaggactatccttttccatcgtaagcga 409  T
Q  214 tga 216  Q
    |||    
T  410 tga 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 187012 - 187215
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| ||   |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  187012 gaaatcaccacctaaaactactgtcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgttcaactacc 187111  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||  ||||||||||||||||||||| |||| |||| ||||| |||||||||||||   | |||||||||||||||||||||| |||||||    
T  187112 tcaaaacaccatgagtgcatcattggagcctcatctcaaattatcaactttgcagcacgcaccag--gtgccctaggactatccttttccatcgtaagcg 187209  T
Q  213 atgatg 218  Q
    ||||||    
T  187210 atgatg 187215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 14038 - 13833
Alignment:
Q  13 gaaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcc 112  Q
    |||||||||||| ||| || |  ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  14038 gaaatcaccacctaaaactattatcattccaccaaatggtttaaactcgtttaggggatcattcttggacatgatatcactcattgatctgtcaactgcc 13939  T
Q  113 tcaaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcg 212  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||  |||| ||||||||||||| ||| ||||| |||||||||||||||| ||||||     
T  13938 tcaaaacaccattagtgcatcattggagcctcatcccaaattatcatctttgcagcacgcaccaggtctgccctaagactatccttttccatcgtaagca 13839  T
Q  213 atgatg 218  Q
    ||||||    
T  13838 atgatg 13833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 42434 - 42638
Alignment:
Q  14 aaatcaccaccgaaatctctggtcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcct 113  Q
    ||||||||||| ||| ||   |||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  42434 aaatcaccacctaaaactactgtcattccaccaaaaggtttaagcacgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcct 42533  T
Q  114 caaaacaccatcggtgcatcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcga 213  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||  | | ||||| ||||||||||||||||  |||||||    
T  42534 caaaacaccatcagtgcatcattggagcctcatcccaaattatcaactttgcagcacgcaccaagtatgccctaagactatccttttccatcttaagcga 42633  T
Q  214 tgatg 218  Q
    |||||    
T  42634 tgatg 42638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 48674 - 48518
Alignment:
Q  60 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcga 159  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  48674 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 48575  T
Q  160 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatga 216  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||||| |||||||||||    
T  48574 ctttgcagcacgcaccaggtctgcccaaggactatccttttccatcgtaagcgatga 48518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 310 - 124
Alignment:
Q  36 tcattccacgaaaaggtctaaactcgtttaggggatcattcttggacatga----tatcacgcattgatcgatcaactgcctcaaaacaccatcggtgca 131  Q
    ||||||||| ||||||| ||| | ||||||||||||||| |||||||||||    ||||||||| |||||| ||| |||||||||||||||||  |||||    
T  310 tcattccaccaaaaggtttaagcgcgtttaggggatcatgcttggacatgaatgatatcacgcaatgatcggtcagctgcctcaaaacaccattagtgca 211  T
Q  132 tcattggagcctcatcccaaactatcgactttccagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 218  Q
    |||||||||||| | |||||| |||| ||||| ||||||||||| | ||| ||||| |||||||||||||||| |||||||||||||    
T  210 tcattggagccttaacccaaattatcaactttgcagcacgcacctggtctgccctaagactatccttttccatcgtaagcgatgatg 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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