View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6741_low_2 (Length: 516)
Name: NF6741_low_2
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Original strand, 1414021 - 1414512
Alignment:
| Q |
17 |
acatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414021 |
acatcattagtaccgtaaaaaagattaccattgtctaatgtttgtgtcaatcccatctctctgtctttttatccaacacgtgtctcaaagctattgttag |
1414120 |
T |
|
| Q |
117 |
gcannnnnnnctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaatttac |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414121 |
gcatttttttctcacaagtgtttgatccaaaagcatggtgtcccaaagcattctagcatgatccgtaaatacagcatgaaacacattatgtcaaatttac |
1414220 |
T |
|
| Q |
217 |
gttttgacaaaattgtcgttgtttatatattagtgtacaacttaaaatttctatgaattagcctcatgaatttcatgaggttaattcatgtactttggtg |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414221 |
gttttgacaaaattgtcattgtttatatattagtgtacaacttaaaatttctatgaattagcctcatgaatttcatgaggttaattcatgtactttggtg |
1414320 |
T |
|
| Q |
317 |
tttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactgga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414321 |
tttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactgga |
1414420 |
T |
|
| Q |
417 |
actatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1414421 |
actatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1414512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 269 - 508
Target Start/End: Original strand, 1419822 - 1420058
Alignment:
| Q |
269 |
atgaattagcctcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgt |
368 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |
|
|
| T |
1419822 |
atgaattagcctcatgaattctatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagtcatgaatgt |
1419921 |
T |
|
| Q |
369 |
gtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttct |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | || ||||||||||||||| ||||| || |
|
|
| T |
1419922 |
gtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag---ct |
1420018 |
T |
|
| Q |
469 |
ttggaaacatatcaggaagagcttctgatgtccatctcat |
508 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
1420019 |
ttggaaacatatcagggagagcttctgatggccgtctcat |
1420058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 362 - 508
Target Start/End: Original strand, 1410990 - 1411136
Alignment:
| Q |
362 |
caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||| |||| |||||||| ||||||| |||||| |
|
|
| T |
1410990 |
caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaata |
1411089 |
T |
|
| Q |
462 |
agcttctttggaaacatatcaggaagagcttctgatgtccatctcat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1411090 |
agcttctttggaaacatatcaggaagagcttctgatggccgtctcat |
1411136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 498
Target Start/End: Original strand, 1408109 - 1408244
Alignment:
| Q |
363 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
462 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||||||||||||||||||||||| | | |||||| ||| ||| |||| ||||||||||| |||| |
|
|
| T |
1408109 |
aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa |
1408208 |
T |
|
| Q |
463 |
gcttctttggaaacatatcaggaagagcttctgatg |
498 |
Q |
| |
|
||| |||||||| || |||||||||||||||||| |
|
|
| T |
1408209 |
gctactttggaagcaccacaggaagagcttctgatg |
1408244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 1410884 - 1410965
Alignment:
| Q |
280 |
tcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga |
361 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||||||||||| || |||||| |||||| |||||||||||| |||||||| |
|
|
| T |
1410884 |
tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga |
1410965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 1408010 - 1408080
Alignment:
| Q |
282 |
atgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagt |
352 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||| |||| |||||||| || ||| |||||||| |
|
|
| T |
1408010 |
atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagt |
1408080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 488
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
| Q |
363 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
462 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| || |||||||||| || |||| | | ||||||||| |||| |
|
|
| T |
3600507 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa |
3600606 |
T |
|
| Q |
463 |
gcttctttggaaacatatcaggaaga |
488 |
Q |
| |
|
|||||||||||| ||| ||||||||| |
|
|
| T |
3600607 |
gcttctttggaagcatctcaggaaga |
3600632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 488
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
| Q |
363 |
aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa |
462 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| || |||||||||| || |||| | ||||||||| |||| |
|
|
| T |
14339374 |
aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa |
14339473 |
T |
|
| Q |
463 |
gcttctttggaaacatatcaggaaga |
488 |
Q |
| |
|
|||||||||||| ||| ||||||||| |
|
|
| T |
14339474 |
gcttctttggaagcatctcaggaaga |
14339499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University