View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_low_3 (Length: 483)
Name: NF6741_low_3
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 24 - 464
Target Start/End: Original strand, 36659417 - 36659854
Alignment:
| Q |
24 |
accacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaagatcctgcaagtgctagaatattcatgggtgcatcaatataatatat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36659417 |
accacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaagatcctgcaagtgctagaatattcatgggtgcatcaatataatatat |
36659516 |
T |
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| Q |
124 |
atcaatcaataaacaacgcagaatatgatatttttaacaattacataaataacttgtttcacctgaagtagtgtaaggtaaccaacctatgctttgtctt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36659517 |
atcaatcaataaacaacgcagaatatgatatttttaacaattacataaataacttgtttcgcctgaagtagtgtaaggtaaccaacctatgctttgtctt |
36659616 |
T |
|
| Q |
224 |
ataaagggagacaacattaaactctttgcaacgcagagagtgtaatttaaacatatcttaggagagaaaaatataacttaaacttactttattattcaac |
323 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36659617 |
ataaagggagacaacattaaactctatgtaacgcagagagtgtaatttaagcatattttaggagagaaaaatataacttaaacttactttattattcaac |
36659716 |
T |
|
| Q |
324 |
tagaagaaagttggtcatgttctattgtatttcatcagataataatcgttgtcataatgacagttaaataattttgacagataagatgaaaatgaatttc |
423 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |
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| T |
36659717 |
tagaagaaagttggtcgtgttctattgtatttcatcag---ataatcgttgtcataataacacttaaataattttgacagataagatgaaaataaatttc |
36659813 |
T |
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| Q |
424 |
ctttataatatctttggtattattaccaatgtttttaaaac |
464 |
Q |
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| T |
36659814 |
ctttataatatcttcggtattattaccaatgtttttaaaac |
36659854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 32079310 - 32079370
Alignment:
| Q |
17 |
acatcataccacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaag |
77 |
Q |
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||||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
32079310 |
acatcctaacacgtgagtgtcgatcctccatgtacccttactcaaaatccttggtcccaag |
32079370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 22719130 - 22719080
Alignment:
| Q |
26 |
cacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaa |
76 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
22719130 |
cacgcgggtgtcgattctccatgtatccttcctcaaaatccttggctccaa |
22719080 |
T |
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