View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_low_4 (Length: 409)
Name: NF6741_low_4
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 8252104 - 8251757
Alignment:
| Q |
21 |
agaggggtcataaaattttcacccaaaaaagaaacaaattgatggtttgattttataatgctttctgattcaataatcgactaatttgatgaacaatagt |
120 |
Q |
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| T |
8252104 |
agaggggtcataaaattttcacccaaaaaagtaacaaattgatggtttgattttataatgctttctgattcaataatcgactaattcgatgaacaataat |
8252005 |
T |
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| Q |
121 |
atcattcattagtgaaggtccaattgatgtatggatttgtccatcacatgagttgttggtcgttgaaaattcggacttgatgtctacagtgtagaataca |
220 |
Q |
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| T |
8252004 |
atcatttattagtgaaggtccaattgatgtatggatttatccttcacatgagttgttggtagttaaaaattcggacttgatatctaccgtgaagaataca |
8251905 |
T |
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| Q |
221 |
cataggtctcaatcattcatcatcaggcaaagatttaggggtttgtagttgcatgtcgttctttacattaagtgagnnnnnnntaagatcatagtgtggt |
320 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |
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| T |
8251904 |
cataggtctcaatcgttcatcatcaggcaaagatttaggggtttgtagttgcatgtagttctttacattaagtgagaaaaaaataagatcatagtgtagt |
8251805 |
T |
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| Q |
321 |
attgattttgatcgttgatttgagatcaaacgatcaaataacatagtt |
368 |
Q |
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| T |
8251804 |
attgactttgattgttgatttgagatcgaacgatcaaataacatagtt |
8251757 |
T |
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