View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6741_low_5 (Length: 376)
Name: NF6741_low_5
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6741_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 22995313 - 22995654
Alignment:
| Q |
16 |
atcacttatgagtatcctaaccatcaaccttcaaccctgttgataacactgaagcaatggaaattcaagatactgtcatcacagaaacccagacccaaac |
115 |
Q |
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| T |
22995313 |
atcacttatgagtatcctaaccatcaaccttcaaccctgttgataacgctgaagcaatggaaattcaagatactgtcatcacagaaacccagacccaaac |
22995412 |
T |
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| Q |
116 |
tcaacctttcattaacccacctcttaccatagttaccaacattatccttagcaatgtgtgcattgagatctttgaaagtctgatggagcttgttgaagat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22995413 |
tcaacctttcattaacccacctcttaccatagttaccaacattatccttagcaatgtgtgcattgagatctttgaaagtctgatggagtttgttgaagat |
22995512 |
T |
|
| Q |
216 |
agaaacaaagatatgccttctatccactatattattaaatgggataagctcaggaagttagttggttgatgctactctggataatcttcaagaaatggat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22995513 |
agaaacaaagatatgccttctatccactatattattaaatgggataagctcaggaagttagttggttgatgctactctggataatcttcaagaaatggat |
22995612 |
T |
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| Q |
316 |
gttacctctcaacaataagctctacaagactagttttctgaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
22995613 |
gttacctctcaacaataagctctacaagactagttttctgaa |
22995654 |
T |
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