View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6741_low_6 (Length: 339)

Name: NF6741_low_6
Description: NF6741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6741_low_6
NF6741_low_6
[»] chr1 (2 HSPs)
chr1 (20-323)||(21880150-21880455)
chr1 (20-58)||(15494177-15494216)
[»] chr3 (1 HSPs)
chr3 (16-323)||(49602698-49603008)
[»] chr8 (4 HSPs)
chr8 (16-323)||(12587148-12587461)
chr8 (16-177)||(35036079-35036245)
chr8 (159-319)||(27324409-27324571)
chr8 (31-163)||(27323175-27323308)
[»] chr7 (1 HSPs)
chr7 (20-323)||(22970170-22970475)
[»] chr6 (2 HSPs)
chr6 (16-226)||(6900983-6901194)
chr6 (218-323)||(6900695-6900803)
[»] chr2 (1 HSPs)
chr2 (16-231)||(22329654-22329869)
[»] chr5 (2 HSPs)
chr5 (16-96)||(3497317-3497398)
chr5 (16-176)||(35360318-35360477)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 21880150 - 21880455
Alignment:
Q  20 atcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcacttatcaa 118  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21880150 atcataaaaataacataaaaacatcaacacaaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaa 21880249  T
Q  119 accctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaata 218  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21880250 accctaacaataaattttacacaatcaacataaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaata 21880349  T
Q  219 agtttaaaatcatgaaaataaggaagagagtgtacctcttagatcaccacaaatggaggaagagag-agaaaaataaggaatgagaagattagagacaca 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |    
T  21880350 agtttaaaatcataaaaataaggaagagagtgtacctcttagatcaccaccaatggaggaagagagaaaaaaaataaggaatgagaagattagagacata 21880449  T
Q  318 agaaac 323  Q
    ||||||    
T  21880450 agaaac 21880455  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 15494177 - 15494216
Alignment:
Q  20 atcataaaaagaacataaaaacatcaaca-aaacacttaa 58  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  15494177 atcataaaaagaacataaaaacatcaacacaaacacttaa 15494216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 49602698 - 49603008
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcactta 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  49602698 atcaatcataaaaagaacataaaaacatcaacacaaacacttaaagcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcactta 49602797  T
Q  115 tcaaaccctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 214  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49602798 tcaaaccctaacaataaagtttgtacaatcaacataaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 49602897  T
Q  215 aataagtttaaaatcatgaaaataaggaagagagtgtacctcttagatcaccacaaatggaggaagagag--agaaaaataaggaatgagaagattagag 312  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||  | ||||||||||||||||||||||||||    
T  49602898 aataagtttaaaatcatataaataaggaagagagtgtacctcttagatcaccaccaatggaggaagagagaaaaaaaaataaggaatgagaagattagag 49602997  T
Q  313 acacaagaaac 323  Q
    |||||||||||    
T  49602998 acacaagaaac 49603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 12587148 - 12587461
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaacaaa-acacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcactta 114  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12587148 atcaatcataaaaagaacataaaaacatcaacacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcactta 12587247  T
Q  115 tcaaaccctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 214  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587248 tcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 12587347  T
Q  215 aataagtttaaaatcatgaaaataaggaagagagtgtacctcttagatcaccacaaatggaggaagagag-----agaaaaataaggaatgagaagatta 309  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||     | ||||| |||||||||||||||||    
T  12587348 aataagtttaaaatcataaaaataaggaagagagtgtacctcttagatcaccatgaatggaggaagagagaaaaaaaaaaaaaaaggaatgagaagatta 12587447  T
Q  310 gagacacaagaaac 323  Q
    ||||||||||||||    
T  12587448 gagacacaagaaac 12587461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 35036245 - 35036079
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcactta 114  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| | |||||| | ||| |||||||||||| ||| || ||||||    
T  35036245 atcaatcataaaaaggacataaaaacatcaacataaacacttaaaggaataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacactta 35036146  T
Q  115 ----tcaaaccctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatag 177  Q
        | |||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||    
T  35036145 attattaaaccctaacaataaagtttacactatcaacataaattcaatatcaacaaagtaataatag 35036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 319
Target Start/End: Original strand, 27324409 - 27324571
Alignment:
Q  159 atcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcatgaaaataaggaagagagtgtacctctt 258  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||  ||| || || ||||||||    
T  27324409 atcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaaatta--gaaaagggtttacctctt 27324506  T
Q  259 ---agatcaccacaaatggaggaagagagagaaaaat-aaggaatgagaagattagagacacaag 319  Q
       |||||||||| |||||||||||||||| || | | ||||||| |||||||||||||||||||    
T  27324507 agaagatcaccaccaatggaggaagagagaaaatagtaaaggaataagaagattagagacacaag 27324571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 27323175 - 27323308
Alignment:
Q  31 aacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcacttatcaaaccctaacaat 129  Q
    ||||||||||||||||   ||||||||||||||||||||||  || |||||| |||||| ||||||||||| ||||||||| || |||||||||||||||    
T  27323175 aacataaaaacatcaaagcaaacacttaaagcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaat 27323274  T
Q  130 aaagtttacgcaatcaacgtaaattcaatatcaa 163  Q
    ||||||||| |||||||| |||||||||||||||    
T  27323275 aaagtttacacaatcaacataaattcaatatcaa 27323308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 22970475 - 22970170
Alignment:
Q  20 atcataaaaagaacataaaaacatcaacaaa-acacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcacttatcaa 118  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  22970475 atcataaaaataacataaaaacatcaacacatacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaa 22970376  T
Q  119 accctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaata 218  Q
    |||||||||||||| |||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22970375 accctaacaataaattttttacaatcaacataaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaata 22970276  T
Q  219 agtttaaaatcatgaaaataaggaagagagtgtacctcttagatcaccacaaatggaggaagagag-agaaaaataaggaatgagaagattagagacaca 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |    
T  22970275 agtttaaaatcataaaaataaggaagagagtgtacctcttagatcaccaccaatggaggaagagagaaaaaaaataaggaatgagaagattagagacata 22970176  T
Q  318 agaaac 323  Q
    ||||||    
T  22970175 agaaac 22970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 6901194 - 6900983
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcactta 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  6901194 atcaatcataaaaagaacataaaaacatcaacacaaacacttaaagcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcactta 6901095  T
Q  115 tcaaaccctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 214  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901094 tcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 6900995  T
Q  215 aataagtttaaa 226  Q
    ||||||||||||    
T  6900994 aataagtttaaa 6900983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 6900803 - 6900695
Alignment:
Q  218 aagtttaaaatcatgaaaataaggaagagagtgtacctcttagatcaccacaaatggaggaagagag---agaaaaataaggaatgagaagattagagac 314  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||   | ||||||||||||||||||||||||||||    
T  6900803 aagtttaaaatcataaaaataaggaagagagtgcacctcttagatcaccaccaatggaggaagagagaaaaaaaaaataaggaatgagaagattagagac 6900704  T
Q  315 acaagaaac 323  Q
    |||||||||    
T  6900703 acaagaaac 6900695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 22329654 - 22329869
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcactta 114  Q
    |||||||||||||  |||| ||||||| ||||| |||||||||||| |||||||||| || ||| || ||||||||  |||||||| |||||||||||||    
T  22329654 atcaatcataaaagaaacaaaaaaacaccaacacaaacacttaaagtaataaaatagcagcaaaattcaagattgta-aataatcccaaataatcactta 22329752  T
Q  115 tcaaaccctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaaca 214  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||| |    
T  22329753 tcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaacttaataatagatgttaactctcattacaataacaaacaaataaaaaa 22329852  T
Q  215 aataagtttaaaatcat 231  Q
    |||||||||||||||||    
T  22329853 aataagtttaaaatcat 22329869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 3497317 - 3497398
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaata 96  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3497317 atcaatcataaaaaggacataaaaatatcaacataaacacttaaagcaataaaatagtcgtaaagttcaagattgttgaata 3497398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 35360318 - 35360477
Alignment:
Q  16 atcaatcataaaaagaacataaaaacatcaaca-aaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatccaaaataatcactta 114  Q
    |||||||||||||||||||| |||||||||||| ||||| |  |||| | ||||||  || ||||||||| ||||||||||||| | |||||| ||| ||    
T  35360318 atcaatcataaaaagaacat-aaaacatcaacataaacattggaagcgaaaaaataacagcaaagtttaaaattgttgaataattccaaataaacac-ta 35360415  T
Q  115 tcaaaccctaacaataaagtttacgcaatcaacgtaaattcaatatcaacaaggtaataata 176  Q
    | |||||||||||||||||||  | | ||||||  || || ||||||  |||||||||||||    
T  35360416 ttaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggcaaggtaataata 35360477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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