View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_high_1 (Length: 630)
Name: NF6743_high_1
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 9401745 - 9402196
Alignment:
| Q |
1 |
ctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaatggaaagatcaggcatataacaaggagaattagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
9401745 |
ctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttatgaaagaacataagtaatggaaaaatcaggcacaaaacaaggagaattagtga |
9401844 |
T |
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| Q |
101 |
caacattgtcaccaaaatgaagaggaaaaaatatgtttcaat--tgttaagttcaacttcgaatgataaaatattacacgtatatataacctggttttag |
198 |
Q |
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||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9401845 |
caacattatcaccaaaatgaagaggaaaaaatacgcttcaatcttgttaagttcaacttcgaatgataaaatattacacgtatatataacctggttttag |
9401944 |
T |
|
| Q |
199 |
accttcatttaatacgttagtattttgagagccacaaatttttctgacctgcggataagcaaaaaataggcacttgataacacatgaatgatatcatatg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9401945 |
accttcatttaatacgttagtattttgagagccacaaatttttttgacctgcggataagcaaaaaataggcacttgataacacatgaatgatatcatatg |
9402044 |
T |
|
| Q |
299 |
tatgtggaagtgtgtctgatatagtagggagtaatttcagcctttgaacaactcacctgaattctttggatgggataagggtacacgtgggctgtttcat |
398 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9402045 |
tatgtagaagtgtgtctgatatagtagggagtaatttcagcctttgaacaactcacctgaattctttggatgagataagggtacacgtgggctgtttcat |
9402144 |
T |
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| Q |
399 |
ggcacccagcaacattgttgtttggaaactagtgattccaatccctttactg |
450 |
Q |
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| T |
9402145 |
ggcacccagcaacattgttgtttggaaactagtgattccaatccctttactg |
9402196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 515 - 617
Target Start/End: Original strand, 9402260 - 9402362
Alignment:
| Q |
515 |
gtaaataccctttattcgaattatagaatctcaaccatgttttgtgttctctaatccgaacgttgttaaaattgaagtcaagaccatagaactatattga |
614 |
Q |
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| T |
9402260 |
gtaaataccctttattcgaattatagaatttcaaccatgttttgtgttctctaatccgaacgttgttacaattgaagtcaagactatagaactatattga |
9402359 |
T |
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| Q |
615 |
tgt |
617 |
Q |
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||| |
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| T |
9402360 |
tgt |
9402362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 9396925 - 9396992
Alignment:
| Q |
323 |
tagggagtaatttcagcctttgaacaactcacctgaattctttggatgggataagggtacacgtgggc |
390 |
Q |
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| T |
9396925 |
tagggagtaatttcagcctttgaacaactcacctgaattctttggatgggataagtgtacacgtgggc |
9396992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 20076093 - 20076183
Alignment:
| Q |
1 |
ctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaatggaaagatcaggcatataacaaggag |
91 |
Q |
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| T |
20076093 |
ctctaggcccaggtggatgacgtgcattaatgtttctactacgtttcaagaagaagagaagtaatggaaagattaggcacaaaacaaggag |
20076183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8930740 - 8930851
Alignment:
| Q |
1 |
ctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaatggaaagatcaggcatataacaaggagaattagtga |
100 |
Q |
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|||||||||||||||| |||| |||| | | |||||||||||||||||||||||| |||||||||||| | ||||| | |||||| |||| |||||| |
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| T |
8930740 |
ctctaggaccaggtgggtgaggttcattgaggcttcttctacgtttctggaagaacagaagtaatggaaaagttaggcacaaaacaagcagaagtagtga |
8930839 |
T |
|
| Q |
101 |
caacattgtcac |
112 |
Q |
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||||||| |||| |
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| T |
8930840 |
caacattatcac |
8930851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 8916900 - 8916990
Alignment:
| Q |
1 |
ctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaatggaaagatcaggcatataacaaggag |
91 |
Q |
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||||||| ||||||||| | ||||||| ||| |||| ||||||||| ||||||| | |||||||||||| || ||||| | ||||||||| |
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| T |
8916900 |
ctctaggcccaggtggatgacgtgcattaatgtttctactacgtttcaggaagaagaaaagtaatggaaaaattaggcacaaaacaaggag |
8916990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 8906056 - 8906146
Alignment:
| Q |
1 |
ctctaggaccaggtggaaaaggtgcattcatggttcttctacgtttctggaagaacataagtaatggaaagatcaggcatataacaaggag |
91 |
Q |
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||||||| ||||||||| | ||||||| ||| |||| ||||||||| ||||||| | |||||||||||| || ||| | | ||||||||| |
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| T |
8906056 |
ctctaggcccaggtggatgacgtgcattaatgtttctactacgtttcaggaagaagaaaagtaatggaaaaattaggaacaaaacaaggag |
8906146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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