View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_high_7 (Length: 404)
Name: NF6743_high_7
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 31816644 - 31816437
Alignment:
| Q |
1 |
caattcaagatgaatttggtgatgagaacatcaattccaataccaacatagtgaaaaattacacagcacagccacaaaacaagtttactcctttggtgaa |
100 |
Q |
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| T |
31816644 |
caattcaagatgaatttggtgatgagaacatcaattccaataccaacatagtgaaaaattacacagcacagccacaaaacaagtttactcctttggtgaa |
31816545 |
T |
|
| Q |
101 |
caactcacttaatgttgcagctccgccattttatgcagcgaaatcatctttcaaggaatcaaatgagaatttgaatttgtcggagagacttaagagaaca |
200 |
Q |
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| T |
31816544 |
caactcacttaatgttgcagctccgccattttatgcagcgaaatcatctttcaaggaatcaaatgagaatttgaatttgtcggagagacttaagagaaca |
31816445 |
T |
|
| Q |
201 |
aggtctgg |
208 |
Q |
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|||||||| |
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| T |
31816444 |
aggtctgg |
31816437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 228 - 385
Target Start/End: Original strand, 31818147 - 31818304
Alignment:
| Q |
228 |
caattacctgaacatttttggctctaacataaggagtatcaccaataggaaccttatgagtgatgtgaaatgattcagaacgagttctgggaacaccaag |
327 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31818147 |
caatcacctgaacatttttggctctaacataaggagtatcaccaataggaaccttatgagtgatgtgaaatgattcagaacgagttctgggaacaccaag |
31818246 |
T |
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| Q |
328 |
aggttttgcaggtgaagaaggtgctgatttggagggtctgaaacctggaggagcattc |
385 |
Q |
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| T |
31818247 |
aggttttgcaggtgaagaaggtgctgatttggagggtctgaaacctggaggagcattc |
31818304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 21290132 - 21290186
Alignment:
| Q |
232 |
tacctgaacatttttggctctaacataaggagtatcaccaataggaaccttatga |
286 |
Q |
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||||||| ||| ||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
21290132 |
tacctgagcatgtttggctttgacataaggagtatcaccataaggaaccttatga |
21290186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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