View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_1 (Length: 716)
Name: NF6743_low_1
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Complemental strand, 37225951 - 37225351
Alignment:
| Q |
18 |
aaaacactctcagaatcaccagatttcaactctattccatcctcctacacatacaccaccaacccacatgatgaaaatgaaatagtagcagaccaagatg |
117 |
Q |
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| T |
37225951 |
aaaacactctcagaatcaccagatttcaactctattccatcctcctacacatacaccaccaacccacatgatgaaaatgaaatagtagcagaccaagatg |
37225852 |
T |
|
| Q |
118 |
aagtcaatgatccaatcccagtcattgattattctctcctgatcaacagtaatcatgatcaacggaccaaaaccatccatgatataggcaaggcttgtga |
217 |
Q |
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| T |
37225851 |
aagtcaatgatccaatcccagtcattgattattctctcctgatcaacggtaatcatgatcaacggaccaaaaccatccatgatataggcaaggcttgtga |
37225752 |
T |
|
| Q |
218 |
ggagtggggtttcttcatactaaccaatcactctgtatcaaagagtctcatggagaaaatggttgaccaagtttttgctttctttaatcttaaagaagaa |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37225751 |
ggagtggggattcttcatactaaccaatcactctgtatcaaagagtctcatggagaaaatggttgaccaagtttttgctttctttaaccttaaagaagaa |
37225652 |
T |
|
| Q |
318 |
gataaacaagtgtatgcagataaggaagtaaaggatgattcaataaagtatggtacaagcttcaatgtttcaggggataaaaacttgttctggagggatt |
417 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225651 |
gataagcaagtgtatgcagataaggaagtaacggatgattcaataaagtatggtacaagcttcaatgtttcaggggataaaaacttgttctggagggatt |
37225552 |
T |
|
| Q |
418 |
tcattaaaattattgttcatcctgaatttcactcaccggataaaccttctggcttcaggtttttgcttattctctcttttgctttttccttgcaactcta |
517 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37225551 |
tcattaaaattattgttcatcctaaatttcactcaccggataaaccttctggcttcaggtttttgcttattctctcttttactttttccttgcaactcta |
37225452 |
T |
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| Q |
518 |
aatccaccatatgctcagtctaaatcaccacatgttgtagattcttaggttgctttgctcataagttttaagttctaaattgtttgtggttatagactta |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225451 |
aatccaccatatgctcagtctaaatcaccacatgttgtagattcttaggttgctttgctcataagttttaagttctaaattgtttgtggttatagactta |
37225352 |
T |
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| Q |
618 |
t |
618 |
Q |
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| T |
37225351 |
t |
37225351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 616 - 705
Target Start/End: Complemental strand, 37224817 - 37224728
Alignment:
| Q |
616 |
tatgttaacttaagtactactccatccgtctcattataagtatctgatttgagttgtgcacggttctttaagaatatgattagttgtgtt |
705 |
Q |
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| T |
37224817 |
tatgttaacttaagtactactccatccgtctcattataagtatctgatttgagttgtgcacggttctttaagaatatgattagttgtgtt |
37224728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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