View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_13 (Length: 340)
Name: NF6743_low_13
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 55720097 - 55720246
Alignment:
| Q |
172 |
tccctaacttcttcatatgatctagtgtggttttaaggcggaggagagaagaggtttgattgtggcagtgatggaggacgttgatgtaggatgcgacagt |
271 |
Q |
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| T |
55720097 |
tccctaacttcttcatatgatctagtgtggttttaaggcggaggagagaagaggtttgattgtggcagtgatggaggacgttgatgtaggatgcgacagt |
55720196 |
T |
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| Q |
272 |
ggtgaaggagctcgtgggtggtgatcgaatctgagaggatcggagaagaa |
321 |
Q |
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| T |
55720197 |
ggtgaaggagctcgtgggtggtgatcgaatctgagaggatcggagaagaa |
55720246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 29207252 - 29207391
Alignment:
| Q |
6 |
tggacatcaataccacagccagtttataaattgtgaattcaaaaacctctagattttgtgaaggggaatgaagaaaatgcaaaattaacacacatcccat |
105 |
Q |
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| T |
29207252 |
tggacatcaacaccacagccagtttataaattgtgaattcaaaaacctctagattttgtgaaggggaatgaagaaaatgcaaaattaacacacatcccat |
29207351 |
T |
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| Q |
106 |
caagcagtagactgttgtttgcgcaaaagaaagcaacata |
145 |
Q |
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| T |
29207352 |
caagcagtagactgttgtttgcacaaaagaaagcaacata |
29207391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 434960 - 434873
Alignment:
| Q |
206 |
aaggcggaggagagaagaggtttgattgtggcagtgatggaggacgttgatgtaggatgcgacagtggtgaaggagctcgtgggtggt |
293 |
Q |
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| T |
434960 |
aaggcggaggaaatgaaaggtttgattgtggtggtgatggaggacgttgatcaaggatgcagcggtggtgaaggagctcatgggtggt |
434873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 5709400 - 5709457
Alignment:
| Q |
204 |
ttaaggcggaggagagaagaggtttgattgtggcagtgatggaggacgttgatgtagg |
261 |
Q |
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| T |
5709400 |
ttaaggcggaggagaagagagctttgattgtggcggtgatggaaggggttgatgtagg |
5709457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 38853124 - 38853165
Alignment:
| Q |
221 |
agaggtttgattgtggcagtgatggaggacgttgatgtagga |
262 |
Q |
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| T |
38853124 |
agaggtttgattgtggcggtgatggaaggcgttgatgtagga |
38853165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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