View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_14 (Length: 282)
Name: NF6743_low_14
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 31730748 - 31730499
Alignment:
| Q |
15 |
gaaagaatcacaaaaataaacgaaaaaagactgaacttacgtcactttccttatctccacctgtctcgtgttctcaatactttaacggcctttacttttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31730748 |
gaaagaatcacaaaaataaacgaaaaaagactgaacttacctcactttccttatctccaccagtctcgtgttctcaatactttaacggcctttacttttc |
31730649 |
T |
|
| Q |
115 |
tcctaaatttaacataaccatgaaggaaacttgaacttatatcaccttcctttagccaccttggtcttgatcattggaaagcgagggcatccttgctttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
31730648 |
tcctaaatttaacataaccatgaaggaaacttgaacttatatcaccttcctttagccaccttggtcttgatcattggaaagcaagggcatctttgctttt |
31730549 |
T |
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| Q |
215 |
taagaacatccataacttt-caaaaaagcctcctacatttctcaatcttg |
263 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31730548 |
taagaacatccataactttccaaaaaagcctcctacatttctcaatcttg |
31730499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 6495993 - 6495748
Alignment:
| Q |
18 |
agaatcacaaaaataaacgaaaaaagactgaacttacgtcactttccttatctccacctgtctcgtgttctcaatactttaacggcctttacttttctcc |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||| ||| ||||||||||||| |
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| T |
6495993 |
agaatcacaaaaataaacgaaaaaaaactgaacttacgtcactttccttatgttcacctctctggtgttctcaatactttaatggcatttacttttctcc |
6495894 |
T |
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| Q |
118 |
taaatttaacataaccatgaaggaaacttgaacttatatcaccttcctttagccaccttggtcttgatcattggaaagcgagggcatccttgctttttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
6495893 |
taaatttaacataaccatgaaggaaacttgaacttatatcaccttcctttagccaccttgatcttgatcattggaaagtgagggcatccttgctttttaa |
6495794 |
T |
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| Q |
218 |
gaacatccataactttcaaaaaagcctcctacatttctcaatcttg |
263 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||||| |
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| T |
6495793 |
gaacatccatacctttccaaaaaacctcctacatttctcaatcttg |
6495748 |
T |
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