View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_19 (Length: 249)
Name: NF6743_low_19
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 35033296 - 35033505
Alignment:
| Q |
22 |
ttacaacatctcaatcttcatccaaatcttattacctttgtccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttcagatg |
121 |
Q |
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|||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
35033296 |
ttacaatatctcaatctttatccaaatcttattacctttttccctatcacagttcctcatgttaatggtcttcctcttgatgctgaaacaacttcagatg |
35033395 |
T |
|
| Q |
122 |
ttcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacagatagttttctt |
221 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35033396 |
tgcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacaaatagttttctt |
35033495 |
T |
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| Q |
222 |
tgacttccaa |
231 |
Q |
| |
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|||||||||| |
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| T |
35033496 |
tgacttccaa |
35033505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 35019364 - 35019162
Alignment:
| Q |
22 |
ttacaacatctcaatcttcatccaaatcttattacctttgtccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttcagatg |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35019364 |
ttacaacatctcaatcttcatccaaatcttattacgtttttccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttcagatg |
35019265 |
T |
|
| Q |
122 |
ttcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacagatagttttctt |
221 |
Q |
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| || ||||||||| |||||||||||||||||||||||||||||||||| || | |||||| ||||| | || || |||||||||| ||||||||||| |
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| T |
35019264 |
tgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagttaaagccacaaatagttttctt |
35019165 |
T |
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| Q |
222 |
tga |
224 |
Q |
| |
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||| |
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| T |
35019164 |
tga |
35019162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 35012335 - 35012136
Alignment:
| Q |
25 |
caacatctcaatcttcatccaaatcttattacctttgtccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttcagatgttc |
124 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35012335 |
caacatctcaatcttcatccaaatcttattacatttttccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttcagatgtgc |
35012236 |
T |
|
| Q |
125 |
ccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacagatagttttctttga |
224 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||||| || | |||||| ||||| | || || |||||||||| |||||||||||||| |
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| T |
35012235 |
cattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagttaaagccacaaatagttttctttga |
35012136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 34998850 - 34998648
Alignment:
| Q |
22 |
ttacaacatctcaatcttcatccaaatcttattacctttgtccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttcagatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
34998850 |
ttacaacatctcaatcttcatccaaatcttattaccattgtccctatcacggttcctcatgttaattgccttcctcatgatgctgaaactacttcagatg |
34998751 |
T |
|
| Q |
122 |
ttcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacagatagttttctt |
221 |
Q |
| |
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| |||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | |||||| |||||| || ||| |||||||||| ||||||||||| |
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| T |
34998750 |
taccctcttctttattccctcttattgctacagccatggaccaaactgagaaacaaattgaatctcttctaaaggaactaaagccacaaatagttttctt |
34998651 |
T |
|
| Q |
222 |
tga |
224 |
Q |
| |
|
||| |
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|
| T |
34998650 |
tga |
34998648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 35026272 - 35026489
Alignment:
| Q |
7 |
aaaacacaaaccaaattacaacatctcaatcttcatccaaatcttattacctttgtccctatcacagttcctcatgttaatggccttcctcataatgctg |
106 |
Q |
| |
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|||||||||||||| |||||||||||||| || | |||||||| || || ||| |||| ||| |||||||| || |||| ||||| || ||||| |
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| T |
35026272 |
aaaacacaaaccaagttacaacatctcaacctaaacccaaatctcatcactttttaccctctcaatgttcctcacattgatggtcttcccgatggtgctg |
35026371 |
T |
|
| Q |
107 |
aaacaacttcagatgttcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagcc |
206 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || | |||||| |||||| || ||| |||| || |
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| T |
35026372 |
aaacatcttcagatgtacccttttctttagtccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaaccc |
35026471 |
T |
|
| Q |
207 |
acagatagttttctttga |
224 |
Q |
| |
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||| |||||||||||||| |
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|
| T |
35026472 |
acaaatagttttctttga |
35026489 |
T |
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