View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_20 (Length: 244)
Name: NF6743_low_20
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28926865 - 28927086
Alignment:
| Q |
1 |
agatacccaataaaaagaaaaccgaaagcaagaaatgaacgaaagactattccagaactcatgaacttaacgttttattcaacaacaggtgtaagggaaa |
100 |
Q |
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| T |
28926865 |
agatacccaataaaaagaaaaccgaaagcaagaaatgaacgaaagactattccagaactcatcaacttaacgttttattcaacaacaggtgtaagggaaa |
28926964 |
T |
|
| Q |
101 |
aaatgcaaaggagttcgatatagaatcaaccttcaatcaaaccaataagggatactacatgggaatgaaatcaaataaaacaatactacttacaattgtg |
200 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28926965 |
aaatgcaaatgagttcgatatagaatcaacctccaatcaaaccaataaggga---tacatgggaatgaaatcaaataaaacaa---tacttacaattgtg |
28927058 |
T |
|
| Q |
201 |
tcacagaccagattgcaagcattgaaat |
228 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
28927059 |
tcacagaccagatcgcaagcattgaaat |
28927086 |
T |
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