View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_21 (Length: 241)
Name: NF6743_low_21
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 18270166 - 18269935
Alignment:
| Q |
1 |
ctatgccgtctaaataaaggggatagggcttcagtcctattgttaaacaagataacaagggaaagctaaattaagacagactaaccttgctgcatagctc |
100 |
Q |
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| T |
18270166 |
ctatgccgtctaaataaaggggatagggcttcagtcctattgttaaacaagataacaagggaaagctaaattaagacagactaaccttgctgcatagctc |
18270067 |
T |
|
| Q |
101 |
tgttgcagttttcttattctccacttcctcaactacttttatcgcttctagccaccatgattcactgtagttgtcttcaacagtgtcttcatattgcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18270066 |
tgttgcagttttcttattctccacttcctcaactacttttatcgcttctagccaccatgaatcactgtagttgtcttcaacagtgtcttcatattgcaga |
18269967 |
T |
|
| Q |
201 |
aaattgggcttgttatcattaggttgatgtcc |
232 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
18269966 |
aaattgggcttgttatcattcggttgatgtcc |
18269935 |
T |
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