View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6743_low_22 (Length: 234)

Name: NF6743_low_22

Description: NF6743

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6743_low_22

[»] chr8 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 154; E-Value: 8e-82

Query Start/End: Original strand, 58 - 215

Target Start/End: Original strand, 31818147 - 31818304

Alignment:

Q	58	caattacctgaacatttttggctctaacataaggagtatcaccaataggaaccttatgagtgatgtgaaatgattcagaacgagttctgggaacaccaag	157	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31818147	caatcacctgaacatttttggctctaacataaggagtatcaccaataggaaccttatgagtgatgtgaaatgattcagaacgagttctgggaacaccaag	31818246	T

Q	158	aggttttgcaggtgaagaaggtgctgatttggagggtctgaaacctggaggagcattc	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31818247	aggttttgcaggtgaagaaggtgctgatttggagggtctgaaacctggaggagcattc	31818304	T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 62 - 116

Target Start/End: Original strand, 21290132 - 21290186

Alignment:

Q	62	tacctgaacatttttggctctaacataaggagtatcaccaataggaaccttatga	116	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	21290132	tacctgagcatgtttggctttgacataaggagtatcaccataaggaaccttatga	21290186	T

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