View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_24 (Length: 233)
Name: NF6743_low_24
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 4446298 - 4446501
Alignment:
| Q |
16 |
catcactcacaaaagggaaaaaccctttcaaacaatcaccaccaactccagattcaccaccaccgtcacaatcaaccatccaaaccggtatcaaatcaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4446298 |
catcactcacaaaagggaaaaaccctttcaaacaatcaccaccaactccagattcaccaccaccgtcacaatcaaccatccaaaccggtatcaaatcaac |
4446397 |
T |
|
| Q |
116 |
aaaaccctcttccaaaaccccaaccctagcatcaccaccattaacctcaacttcactcttcatacaataaatgctacagtaactcacaaccccttccacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4446398 |
aaaaccctcttccaaaaccccaaccctagcatcaccaccattaacctcaacttcactcttcatacaataaatgctacagtaactcacaaccccttccacc |
4446497 |
T |
|
| Q |
216 |
aaac |
219 |
Q |
| |
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|||| |
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| T |
4446498 |
aaac |
4446501 |
T |
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