View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_26 (Length: 224)
Name: NF6743_low_26
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_26 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0144 (2 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 7727 - 7903
Alignment:
| Q |
26 |
cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacac |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
7727 |
cataaatttccaagtacctcaaatgcactaaactcttcaataatgagagttcatttgaacgtgtaagcaaaactcgaagagaggtgcttgacagaaacac |
7826 |
T |
|
| Q |
126 |
atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgtggt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7827 |
atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgtggt |
7903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 12106 - 12269
Alignment:
| Q |
33 |
ttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaa |
132 |
Q |
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|||||||||||||||||||| |||| || ||||||||||| ||| || |||||| ||| ||||||| | ||| |||| ||||||||||||| | |
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| T |
12106 |
ttccaagtacctcaaatgcattaaa---tttgatgatgagagtcgatgagactttgtatgtaaagctcgaagcgaagtggttgatagaaacacatctaga |
12202 |
T |
|
| Q |
133 |
ttcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
12203 |
ttctttgagggtggtttatactcaagaaaggttcgcaaggaatcaaatttttggaagggaatcatgt |
12269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 16986711 - 16986874
Alignment:
| Q |
36 |
caagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaattc |
135 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||| ||| |||||||||| || |||| || | | ||| ||||||| |
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| T |
16986711 |
caagtacctcaaatgcattaaactcttcaatgatgatagttgatgagaacttgtatgtaaagctcgaagaggagtttttgatagtagcgcatttaaattc |
16986810 |
T |
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| Q |
136 |
ttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
16986811 |
ttggagggttgtttatactcaagaaaggttcgcaaggaatcaactttttggcagggaatcatgt |
16986874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 16787221 - 16787387
Alignment:
| Q |
33 |
ttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaa |
132 |
Q |
| |
|
||||||||||||||| || | ||||||| |||||||||||||||||| ||| || ||| ||| |||||||||||||||| || || |||| || ||| |
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| T |
16787221 |
ttccaagtacctcaagtgaattaaactcatcaatgatgagagttgatgaaaacttgcatgtaaagctcgaagaggggtgctagatagcaacatatttaag |
16787320 |
T |
|
| Q |
133 |
ttcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
16787321 |
ttcttggaaggtggtttatactcaagaaaggttcgcaaggaatcaaatttttggaagggaatcatgt |
16787387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 16657268 - 16657432
Alignment:
| Q |
35 |
ccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaatt |
134 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| |||||||||| |||| | || ||| |||| ||||| |||||||| |||||| |||||||||| |
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| T |
16657268 |
ccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaacttatacataaagctcggagaggagtgcttgatagaaacgcatctaaatt |
16657367 |
T |
|
| Q |
135 |
cttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
| |
|
|||| | ||| | |||||||||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
16657368 |
cttgcaaggtcgcgtatactcaaggaaagttcgcaaggaatcaactttttggaagggaatcatgt |
16657432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 17068752 - 17068923
Alignment:
| Q |
28 |
taaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacat |
127 |
Q |
| |
|
|||| |||||||||||||||||| | |||| |||||||||| |||||||||| |||| || | | ||| |||| |||| || | || || ||||||| |
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| T |
17068752 |
taaagttccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaacctgaacgtaaagctcggagagaaatgatcgatagcaacacat |
17068851 |
T |
|
| Q |
128 |
ctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
| |
|
|| || | ||| ||| ||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||| |
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| T |
17068852 |
ctgaacttttgtaggttggtttaagttcaagaaaggttcgcaaggattcaacttttttgaaaggaatcatgt |
17068923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 16796417 - 16796586
Alignment:
| Q |
33 |
ttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaa |
132 |
Q |
| |
|
|||||||||||||| ||| | |||| |||||||||| |||| |||| |||| |||| | ||| |||| ||||| | |||| | |||||||||||| |
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| T |
16796417 |
ttccaagtacctcacatgtattaaattcttcaatgaagagaattgacaagaacttgtacgtaaagctcggagaggaacgattgatggcaacacatctaaa |
16796516 |
T |
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| Q |
133 |
ttcttggagg---gtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
| |
|
|| ||| || |||||||| | |||||||||||||||||||| |||||||||| ||| ||||| |||| |
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| T |
16796517 |
tttatggtggtgggtggtttaaattcaagaaaggttcgcaaggattcaacttttttgaaaggaatcatgt |
16796586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 16843050 - 16843102
Alignment:
| Q |
26 |
cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttga |
78 |
Q |
| |
|
|||||| |||||||||||||||||| | |||| ||||||| | |||||||||| |
|
|
| T |
16843050 |
cataaagttccaagtacctcaaatggattaaattcttcaaggctgagagttga |
16843102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 20153688 - 20153846
Alignment:
| Q |
26 |
cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacac |
125 |
Q |
| |
|
|||||| |||||||||||||||||| | |||| |||||| || |||||||||| | || |||| | ||| |||| ||||| |||||||| || ||||| |
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|
| T |
20153688 |
cataaagttccaagtacctcaaatgtattaaagtcttcattgttgagagttgaaaaggacttgtacgtaaagctcggagaggagtgcttgataggaacac |
20153787 |
T |
|
| Q |
126 |
atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttg |
185 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
20153788 |
at-taaattcttggagggtggtttatactcaagaaaggtccgcaaggaatcaactttttg |
20153846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 36739 - 36910
Alignment:
| Q |
28 |
taaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacat |
127 |
Q |
| |
|
|||| |||||||||||||||||| | |||| |||||||||| |||||||||| |||| ||| | ||| |||| ||||| |||||||| || ||| ||| |
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|
| T |
36739 |
taaagttccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaactggtacgtaaagctcggagaggagtgcttgatagcaacgcat |
36838 |
T |
|
| Q |
128 |
ctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt |
199 |
Q |
| |
|
||||||||||| | ||| | |||||||||| || ||||||||||||||||| |||||||||||||| |||| |
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|
| T |
36839 |
ctaaattcttgcaaggtcgcgtatactcaaggaaagttcgcaaggaatcaacattttggaagggaatcatgt |
36910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 35319 - 35423
Alignment:
| Q |
34 |
tccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaat |
133 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||| |||||||||| |||| |||| ||| |||| ||||| |||||||| || ||| ||||||||| |
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|
| T |
35319 |
tccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaacttgtacataaagctcggagaggagtgcttgatagcaacgcatctaaat |
35418 |
T |
|
| Q |
134 |
tcttg |
138 |
Q |
| |
|
||||| |
|
|
| T |
35419 |
tcttg |
35423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 13377336 - 13377500
Alignment:
| Q |
26 |
cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacac |
125 |
Q |
| |
|
|||||| |||||||||||||| ||| | || | |||||||| |||||||||| |||| |||| | ||| |||| ||||| ||| |||| |||||| |
|
|
| T |
13377336 |
cataaagttccaagtacctcagatgaattatattcttcaatcctgagagttgaaaagaacttgtacgtaaagctcggagaggagtgattgatggaaacaa |
13377435 |
T |
|
| Q |
126 |
atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagg |
190 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
13377436 |
atctaaaattttgcagggtggtttgaactcaagaaaggttcgcaaggattcaactttttcgaagg |
13377500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 7054088 - 7054015
Alignment:
| Q |
121 |
aacacatctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaat |
194 |
Q |
| |
|
||||||||||| || |||| || |||| || |||||||||||||||||||||| |||| ||| | ||||||||| |
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|
| T |
7054088 |
aacacatctaattttttggtggatggtctaaactcaagaaaggttcgcaaggattcaattttattgaagggaat |
7054015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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