View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6743_low_3 (Length: 557)

Name: NF6743_low_3
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6743_low_3
NF6743_low_3
[»] chr5 (1 HSPs)
chr5 (1-538)||(23085721-23086286)
[»] chr6 (3 HSPs)
chr6 (241-442)||(19747311-19747512)
chr6 (397-440)||(33568389-33568432)
chr6 (172-225)||(5978194-5978247)
[»] chr8 (1 HSPs)
chr8 (187-232)||(11345983-11346028)
[»] chr7 (12 HSPs)
chr7 (398-441)||(24035154-24035197)
chr7 (172-223)||(26255964-26256015)
chr7 (187-233)||(26236028-26236074)
chr7 (392-431)||(13888646-13888685)
chr7 (398-428)||(22080310-22080340)
chr7 (191-232)||(24034934-24034975)
chr7 (395-432)||(24390868-24390905)
chr7 (395-432)||(36254802-36254839)
chr7 (400-428)||(22063098-22063126)
chr7 (400-428)||(22069567-22069595)
chr7 (397-441)||(24001601-24001645)
chr7 (235-263)||(24009626-24009654)
[»] chr4 (3 HSPs)
chr4 (187-232)||(23839887-23839932)
chr4 (398-432)||(11971582-11971616)
chr4 (395-432)||(19356931-19356968)
[»] scaffold0707 (1 HSPs)
scaffold0707 (397-440)||(4783-4826)
[»] chr3 (1 HSPs)
chr3 (187-233)||(36339297-36339343)
[»] chr1 (1 HSPs)
chr1 (398-431)||(15960673-15960706)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Original strand, 23085721 - 23086286
Alignment:
Q  1 ttctatggaactgttttgggtaatttaaatttaacaaaatcaggattcacgacaaactcagagtaaaaatagaagtcggtataattggtttgcgaggaaa 100  Q
    |||||||| ||||| ||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  23085721 ttctatggtactgtattgggtaatttaagtttaataacatcaggattcacgacaaactcaaagtaaaaatagaagtcggtataattggtttgcgatgaaa 23085820  T
Q  101 aacgcccgtactaaaaagcgatctcaatccaacacacctatcattcccga---------------aatccttattcttcttaacccgaaaacaatcgcgc 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||    
T  23085821 aacgaccgtactaaaaagcgatctcaatccaacacacctatcattcccgacgaactcattgccgaaatccttattcttcttaacccgaaaacaatcgcgc 23085920  T
Q  186 tattcaaatgcgtaagcaagtcatggaacactctcatctcggatccaatc-------------atcttaagaagtcatcacaaaacccacatctcatact 272  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||             ||||||||||||||||||||||||||| |||||||||    
T  23085921 tattcaaatgcgtaagcaagtcatggaacactctcgtctccgatccaatcttcataaagaatcatcttaagaagtcatcacaaaacccacgtctcatact 23086020  T
Q  273 cacaccactaacttcgaagtaccctatcagtagtgtcgaatccttccctgtgagttgtttactcgagaattcttcgatcattgtctccggtgacaattgc 372  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  23086021 cacaccactaacttcgaagtaccctatcagtaatgtcgaatccttctctgtgagtcgtttactcgagaattcttcgatcattgtttccggtgacaattgc 23086120  T
Q  373 catggatcagaggacacttgtcatgttgttggttcctgcaatggattgctttgcttgcttttccattctcgctataagaaaagtttctatgtgtatcaga 472  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23086121 catggatcagaggacacatgtcatgttgttggttcctgcaatggattgctttgcttgcttttccattctcgctataagaaaagtttctatgtgtataaga 23086220  T
Q  473 aatattggttttgtctatggaaccccgccacgaggacaaaatctgagaaattaggaatttttaaag 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23086221 aatattggttttgtctatggaaccccgccacgaggacaaaatctgagaaattaggaatttttaaag 23086286  T

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Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 241 - 442
Target Start/End: Complemental strand, 19747512 - 19747311
Alignment:
Q  241 aagaagtcatcacaaaacccacatctcatactcacaccactaacttcgaagtaccctatcagtagtgtcgaatccttccctgtgagttgtttactcgaga 340  Q
    |||||||| |||||||| |||||  ||||||||||||||| ||||| ||| || |||||||||||||| || |||||||| |||||| ||||||||||||    
T  19747512 aagaagtcttcacaaaatccacacatcatactcacaccaccaactttgaaatatcctatcagtagtgtagagtccttccccgtgagtcgtttactcgaga 19747413  T
Q  341 attcttcgatcattgtctccggtgacaattgccatggatcagaggacacttgtcatgttgttggttcctgcaatggattgctttgcttgcttttccattc 440  Q
    || |||| |||| ||| |  |||||||||| |||||  |   | ||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||    
T  19747412 atccttcaatcactgtttttggtgacaatttccatgatttgaatgacacttgtcaggttattggttcctgcaatggattgttttgcttgattttccattc 19747313  T
Q  441 tc 442  Q
    ||    
T  19747312 tc 19747311  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 33568389 - 33568432
Alignment:
Q  397 gttgttggttcctgcaatggattgctttgcttgcttttccattc 440  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||    
T  33568389 gttgttggttcctgcaacggattgctctgcttgcttttcaattc 33568432  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 5978194 - 5978247
Alignment:
Q  172 gaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcatctc 225  Q
    |||||| ||||| | |||||| ||||| | ||||||||||||||||||||||||    
T  5978194 gaaaaccatcgcacgattcaagtgcgtgaacaagtcatggaacactctcatctc 5978247  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 11346028 - 11345983
Alignment:
Q  187 attcaaatgcgtaagcaagtcatggaacactctcatctcggatcca 232  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||    
T  11346028 attcaaatgcgtgagcaagtcatggaacactctcatctccgatcca 11345983  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 24035154 - 24035197
Alignment:
Q  398 ttgttggttcctgcaatggattgctttgcttgcttttccattct 441  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  24035154 ttgttggttcctgtaatggattgctttgcttgcttttcaattct 24035197  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 26255964 - 26256015
Alignment:
Q  172 gaaaacaatcgcgctattcaaatgcgtaagcaagtcatggaacactctcatc 223  Q
    |||||| |||| ||||||||||||||| |||||||| |||||||||||||||    
T  26255964 gaaaaccatcgtgctattcaaatgcgtgagcaagtcttggaacactctcatc 26256015  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 26236028 - 26236074
Alignment:
Q  187 attcaaatgcgtaagcaagtcatggaacactctcatctcggatccaa 233  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||    
T  26236028 attcaaatgcgtgagcaagtcctggaacactctcatctctgatccaa 26236074  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Complemental strand, 13888685 - 13888646
Alignment:
Q  392 gtcatgttgttggttcctgcaatggattgctttgcttgct 431  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  13888685 gtcatgttgttggttcctgcaatggattggtctgcttgct 13888646  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 428
Target Start/End: Original strand, 22080310 - 22080340
Alignment:
Q  398 ttgttggttcctgcaatggattgctttgctt 428  Q
    |||||||||||||||||||||||||||||||    
T  22080310 ttgttggttcctgcaatggattgctttgctt 22080340  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 24034934 - 24034975
Alignment:
Q  191 aaatgcgtaagcaagtcatggaacactctcatctcggatcca 232  Q
    |||||||| ||||||||||||||| |||||||||| ||||||    
T  24034934 aaatgcgtgagcaagtcatggaacgctctcatctccgatcca 24034975  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 24390868 - 24390905
Alignment:
Q  395 atgttgttggttcctgcaatggattgctttgcttgctt 432  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24390868 atgttgttggttcctgcaatggtttggtttgcttgctt 24390905  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 36254802 - 36254839
Alignment:
Q  395 atgttgttggttcctgcaatggattgctttgcttgctt 432  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  36254802 atgttgttggttcttgcaatggattgctttgtttgctt 36254839  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 22063098 - 22063126
Alignment:
Q  400 gttggttcctgcaatggattgctttgctt 428  Q
    |||||||||||||||||||||||||||||    
T  22063098 gttggttcctgcaatggattgctttgctt 22063126  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 428
Target Start/End: Original strand, 22069567 - 22069595
Alignment:
Q  400 gttggttcctgcaatggattgctttgctt 428  Q
    |||||||||||||||||||||||||||||    
T  22069567 gttggttcctgcaatggattgctttgctt 22069595  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 24001601 - 24001645
Alignment:
Q  397 gttgttggttcctgcaatggattgctttgcttgcttttccattct 441  Q
    ||||||||||| || ||||||||| | ||||||||||||||||||    
T  24001601 gttgttggttcatgtaatggattgatctgcttgcttttccattct 24001645  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 24009626 - 24009654
Alignment:
Q  235 catcttaagaagtcatcacaaaacccaca 263  Q
    |||||||||||||||||||||||||||||    
T  24009626 catcttaagaagtcatcacaaaacccaca 24009654  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 23839887 - 23839932
Alignment:
Q  187 attcaaatgcgtaagcaagtcatggaacactctcatctcggatcca 232  Q
    ||||||||| || |||||||||||||||||||||||||| ||||||    
T  23839887 attcaaatgtgtgagcaagtcatggaacactctcatctccgatcca 23839932  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 432
Target Start/End: Complemental strand, 11971616 - 11971582
Alignment:
Q  398 ttgttggttcctgcaatggattgctttgcttgctt 432  Q
    |||||||||| ||||||||||||||||||||||||    
T  11971616 ttgttggttcgtgcaatggattgctttgcttgctt 11971582  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 19356931 - 19356968
Alignment:
Q  395 atgttgttggttcctgcaatggattgctttgcttgctt 432  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  19356931 atgttgttggttcttgcaatggattgctttgtttgctt 19356968  T

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Target: scaffold0707 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 4783 - 4826
Alignment:
Q  397 gttgttggttcctgcaatggattgctttgcttgcttttccattc 440  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||    
T  4783 gttgttggttcctgcaacggattgctctgcttgcttttcaattc 4826  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 36339297 - 36339343
Alignment:
Q  187 attcaaatgcgtaagcaagtcatggaacactctcatctcggatccaa 233  Q
    |||||| || || |||||||||||||||||||||||||| |||||||    
T  36339297 attcaagtgtgtgagcaagtcatggaacactctcatctcagatccaa 36339343  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 15960673 - 15960706
Alignment:
Q  398 ttgttggttcctgcaatggattgctttgcttgct 431  Q
    |||||||||| |||||||||||||||||||||||    
T  15960673 ttgttggttcttgcaatggattgctttgcttgct 15960706  T

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