View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_5 (Length: 467)
Name: NF6743_low_5
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 563643 - 563197
Alignment:
| Q |
1 |
aatgcgagtggtgttgtagaaaaagttgaaattgtaaatgtcttgaagaggttaattgtagatgaaggaattgagattcgtggaagaatcaaagtactaa |
100 |
Q |
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| T |
563643 |
aatgtgagtggtgttgtagaaaaagttgaaattgtaaatgtcttgaagaggttaattgtagatgaaggaattgagattcgtagaagaatgaaagtactaa |
563544 |
T |
|
| Q |
101 |
aagatgctgctgctaatgcaatgaaagtagatggatcttccataatcattatgtcccaattggtcaccaaatggacaaagatggaaggttttgatgaaaa |
200 |
Q |
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| T |
563543 |
aagatgctgctgctaatgcaatgaaagtagatggatcttccataatcactatgtcccaattggtcacaaaatggacaaagatggaaggttttgatgaaaa |
563444 |
T |
|
| Q |
201 |
ttagtttcatattttttctacgtacgtatgaatgtgaatgtaatgtatttttcttagcttggttctgttttaacttttgtatgaccgtaaaaataaattc |
300 |
Q |
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| T |
563443 |
ttagtttcatattttttctacgtacgtatg------aatgcaatgtatttttcttagcttggttctgttttaacttttgcatgaccgtaaaaataaattc |
563350 |
T |
|
| Q |
301 |
tattatcatactattgttctttggttacaactatcatattgttcattttaatatgtatttatttttcattaaattgactattgagtcttttatatcttag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
563349 |
tattatcatactattgttctttggttacaactatcatattgttcattttaatatgtatttatttttcatgaaattgactattgagtcttttatatcttag |
563250 |
T |
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| Q |
401 |
aaattacaataccacttaaagaaagaaggtgggatgtttgtgcaaggaacaat |
453 |
Q |
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| T |
563249 |
aaattacaataccacttaaagaaagaaggtgggatgtttgtgctaggaacaat |
563197 |
T |
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