View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_6 (Length: 467)
Name: NF6743_low_6
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 30020400 - 30019957
Alignment:
| Q |
1 |
tagcaatagtgaatggcgctgaacatacataaattgctccgccaacaccaaccaaccattcaggaaggacaaattgtgtactacaagtattctatgatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30020400 |
tagcaatagtgaatggcgctgaacatacataaattgctcc----------accaaccattcaggaaggacaaattgtgtactacaagtattctatgatct |
30020311 |
T |
|
| Q |
101 |
tccctatacaagtttgatacctatatgtgtttctgctaaatgtatgctcacaggaaggtttaaaacacttcacttcattgcttaagacacattacaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30020310 |
tccctatacaagtttgatacctatatgtgtttctgctaaatgtatgctcacaggaaggtttaaaacacttcacttcattgcttaagacacattacaagac |
30020211 |
T |
|
| Q |
201 |
aaatgtctattcccttagccttgttttgagcatttgttttaacactttagctatgactcatgggaaacaggttcatggtattatagtgccatatggcttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30020210 |
aaatgtctattcccttagccttgttttgagcatttgttttaacactttagctatgactcatggaaaacaggttcatggtattatagtgccatatggcttc |
30020111 |
T |
|
| Q |
301 |
gctggaaataaaaactggggtaataccaaaatatagttaatttagaactaatttacaacttaccaagggtctgtttggtaacacgcatatgctagcttat |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30020110 |
gttggaaataaaaactggggtaataccaaaatatagttaatttagaactaatttacaacttaccaagggtctggttggtaacacgcatatgctagcttat |
30020011 |
T |
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| Q |
401 |
ataacttataagctcgcatgtctaaaaataagtggaaaaattccttcatgatgt |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30020010 |
ataacttataagctcgcatgtctaaaaataagtggaaaaatttcttcatgatgt |
30019957 |
T |
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