View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_7 (Length: 441)
Name: NF6743_low_7
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 31816644 - 31816247
Alignment:
| Q |
1 |
caattcaagatgaatttggtgatgagaacatcaattccaataccaacatagtgaaaaattacacagcacagccacaaaacaagtttactcctttggtgaa |
100 |
Q |
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| T |
31816644 |
caattcaagatgaatttggtgatgagaacatcaattccaataccaacatagtgaaaaattacacagcacagccacaaaacaagtttactcctttggtgaa |
31816545 |
T |
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| Q |
101 |
caactcacttaatgttgcagctccgccattttatgcagcgaaatcatctttcaaggaatcaaatgagaatttgaatttgtcggagagacttaagagaaca |
200 |
Q |
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| T |
31816544 |
caactcacttaatgttgcagctccgccattttatgcagcgaaatcatctttcaaggaatcaaatgagaatttgaatttgtcggagagacttaagagaaca |
31816445 |
T |
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| Q |
201 |
aggtctggaaatgctgcaggattactgagagtggatgatgtgaacagcaacaaggtgaatgtggaattaggtgtgcctgggaacaaagcaagaaggcttt |
300 |
Q |
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| T |
31816444 |
aggtctggaaatgctgcaggattactgagagtggatgatgtgaacagcaacaaggtgaatgtggaattaggtgtgcctgggaacaaagcaagaaggcttt |
31816345 |
T |
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| Q |
301 |
catttgagaagaataagttgtgtgatttgttgcctgatactaaggactttgaagatgctattcttgctgctgttttggggtcttcaaatgagttggag |
398 |
Q |
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| T |
31816344 |
catttgagaagaataagttgtgtgatttgttgcctgatactaaggactttgaagatgctattcttgctgctgttttggggtcttcaaatgagttggag |
31816247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 31818275 - 31818304
Alignment:
| Q |
393 |
ttggagggtctgaaacctggaggagcattc |
422 |
Q |
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| T |
31818275 |
ttggagggtctgaaacctggaggagcattc |
31818304 |
T |
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