View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6743_low_8 (Length: 433)
Name: NF6743_low_8
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6743_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 18270554 - 18270135
Alignment:
| Q |
9 |
atggacatcactgtttttgatacaggaaaccctatagattttatccaagtaccaaacaattggcttgtgccgatacaacacattcacctaggaaaacaaa |
108 |
Q |
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| T |
18270554 |
atggacatcactgtttttgatacaggaaaccctatagattttatccaagtatcaaacaattggcttgtgccgatacaacacattcacctaggaaaacaaa |
18270455 |
T |
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| Q |
109 |
tgcaccccccacatcacacagagagggagaaggttcattttttacttcacggggttgaaagaaagattttatcatggccttgcacccacttgcaaagagg |
208 |
Q |
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| T |
18270454 |
tgcaccccccacatcacacagagagg-agaaggttcattttttacttcacggggttgaaagaaagattttatcatgcccttgcacccacttgcaaagagg |
18270356 |
T |
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| Q |
209 |
tcttcaccagctgagcttttcaacatcttacatcgctcacttaatccgcttatcaaaaacaaaaaccatttaattcttataacttcacttcaaatttaat |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18270355 |
tcttcaccagctgagcttgtcaacatcttacatcgctca----atccgcttatcaaaaacaaaaaccatttaattcttataacttcacttcaaatttaat |
18270260 |
T |
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| Q |
309 |
ttagtcctttagttcaaaacagattaaaagtaggtccctgtttgttttaaaatcaaacaaagcacaatctattgtatttgaaactacactctcctatgcc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18270259 |
ttagtcctttagttcaaaacagattaaaagtaggtccctgtttgttttaaaatcaaacaaagcacaatctattgtatttgaaactacactctcctatgcc |
18270160 |
T |
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| Q |
409 |
gtctaaataatggggatagggcttc |
433 |
Q |
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| T |
18270159 |
gtctaaataaaggggatagggcttc |
18270135 |
T |
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