View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6743_low_9 (Length: 423)

Name: NF6743_low_9
Description: NF6743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6743_low_9
NF6743_low_9
[»] scaffold0438 (3 HSPs)
scaffold0438 (152-320)||(9644-9812)
scaffold0438 (7-70)||(9892-9956)
scaffold0438 (304-333)||(9601-9630)
[»] chr8 (9 HSPs)
chr8 (152-320)||(26339483-26339651)
chr8 (152-320)||(26292871-26293039)
chr8 (152-320)||(26306128-26306296)
chr8 (7-70)||(26293119-26293183)
chr8 (7-70)||(26306376-26306440)
chr8 (7-70)||(26339731-26339795)
chr8 (304-333)||(26292828-26292857)
chr8 (304-333)||(26306085-26306114)
chr8 (304-333)||(26339440-26339469)
[»] chr1 (2 HSPs)
chr1 (152-320)||(21778546-21778714)
chr1 (304-333)||(21778503-21778532)
[»] chr4 (5 HSPs)
chr4 (153-320)||(31142301-31142468)
chr4 (153-320)||(31142832-31142999)
chr4 (38-74)||(14066772-14066808)
chr4 (11-55)||(14066704-14066748)
chr4 (7-43)||(31143505-31143541)


Alignment Details
Target: scaffold0438 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 9812 - 9644
Alignment:
Q  152 cttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagt 251  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9812 cttgtttagagaataagagtaccagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaacatttagt 9713  T
Q  252 attggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712 attgggccttagcccctacggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 9644  T

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Target: scaffold0438; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 9956 - 9892
Alignment:
Q  7 attatatcatattttgataccattatctactagtagtactaca-ttttttctaaataaaaggtaa 70  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  9956 attatatcattttttgataccattatctactagtagtattacatttttttctaaatagaaggtaa 9892  T

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Target: scaffold0438; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 9630 - 9601
Alignment:
Q  304 ttgacagtcttcttcttttagatctgacat 333  Q
    ||||||||||||||||||||||||||||||    
T  9630 ttgacagtcttcttcttttagatctgacat 9601  T

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Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 26339651 - 26339483
Alignment:
Q  152 cttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagt 251  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26339651 cttgtttagagaataagagtaccagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaacatttagt 26339552  T
Q  252 attggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26339551 attgggccttagcccctacggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 26339483  T

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Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 26293039 - 26292871
Alignment:
Q  152 cttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagt 251  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26293039 cttgtttagagaataagagtaccagtactatttttctttttaaaagaaaggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaacatttagt 26292940  T
Q  252 attggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26292939 attgggccttagcccctacggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 26292871  T

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Target: chr8; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 26306296 - 26306128
Alignment:
Q  152 cttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagt 251  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26306296 cttgtttagagaataagagtaccagtactatttttctttttaaaagaaaggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaacatttagt 26306197  T
Q  252 attggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26306196 attgggccttagcccctacggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 26306128  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 26293183 - 26293119
Alignment:
Q  7 attatatcatattttgataccattatctactagtagtactaca-ttttttctaaataaaaggtaa 70  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  26293183 attatatcattttttgataccattatctactagtagtattacatttttttctaaatagaaggtaa 26293119  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 26306440 - 26306376
Alignment:
Q  7 attatatcatattttgataccattatctactagtagtactaca-ttttttctaaataaaaggtaa 70  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  26306440 attatatcattttttgataccattatctactagtagtattacatttttttctaaatagaaggtaa 26306376  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 26339795 - 26339731
Alignment:
Q  7 attatatcatattttgataccattatctactagtagtactaca-ttttttctaaataaaaggtaa 70  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  26339795 attatatcattttttgataccattatctactagtagtattacatttttttctaaatagaaggtaa 26339731  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 26292857 - 26292828
Alignment:
Q  304 ttgacagtcttcttcttttagatctgacat 333  Q
    ||||||||||||||||||||||||||||||    
T  26292857 ttgacagtcttcttcttttagatctgacat 26292828  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 26306114 - 26306085
Alignment:
Q  304 ttgacagtcttcttcttttagatctgacat 333  Q
    ||||||||||||||||||||||||||||||    
T  26306114 ttgacagtcttcttcttttagatctgacat 26306085  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 26339469 - 26339440
Alignment:
Q  304 ttgacagtcttcttcttttagatctgacat 333  Q
    ||||||||||||||||||||||||||||||    
T  26339469 ttgacagtcttcttcttttagatctgacat 26339440  T

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Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 21778714 - 21778546
Alignment:
Q  152 cttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagt 251  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  21778714 cttgtttagagaataagagtaccaatactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaatatttagt 21778615  T
Q  252 attggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21778614 attgggccttagcccctagggcccagataagtttctacaactttaacctagtttgacaatcttcttctt 21778546  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 21778532 - 21778503
Alignment:
Q  304 ttgacagtcttcttcttttagatctgacat 333  Q
    ||||||||||||||||||||||||||||||    
T  21778532 ttgacagtcttcttcttttagatctgacat 21778503  T

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Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 31142468 - 31142301
Alignment:
Q  153 ttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagta 252  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31142468 ttgtttagagaataagagtatcagtactatttttctttttaaaagtcaggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaacatttagta 31142369  T
Q  253 ttggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  31142368 ttgggccttagcccctagggtccagataagtttctacaactttaacttagtttgacaatcttcttctt 31142301  T

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Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 31142999 - 31142832
Alignment:
Q  153 ttgtttagagaataagagtgtcagtactatttttctttttaaaagataggtgtgtgttagtaaaagagtaaagtgttttataaaagaaaaacatttagta 252  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31142999 ttgtttagagaataagagtatcagtactatttttctttttaaaagtcaggtgtgtgttagtaaaagagtaaagtgttttataaaaggaaaacatttagta 31142900  T
Q  253 ttggaccttagcctctagggcccagataagtttctacaactttaacctagtttgacagtcttcttctt 320  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  31142899 ttgggccttagcccctagggtccagataagtttctacaactttaacttagtttgacaatcttcttctt 31142832  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 14066772 - 14066808
Alignment:
Q  38 agtagtactacattttttctaaataaaaggtaaggta 74  Q
    |||||||||||||||||||||||||||||||||||||    
T  14066772 agtagtactacattttttctaaataaaaggtaaggta 14066808  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 14066704 - 14066748
Alignment:
Q  11 tatcatattttgataccattatctactagtagtactacatttttt 55  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||    
T  14066704 tatcattttttgataccattatctattagtagtactaaatttttt 14066748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 31143541 - 31143505
Alignment:
Q  7 attatatcatattttgataccattatctactagtagt 43  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31143541 attatatcattttttgataccattatctactagtagt 31143505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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