View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_high_10 (Length: 494)
Name: NF6745_high_10
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 48307739 - 48308182
Alignment:
| Q |
1 |
ccctggaaaaagctttgacacaaaattgaaccagaaatgcaatgatggtcctaaaatgatcatcccatatcccgccatgcgtaaagtccttataaaatca |
100 |
Q |
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| T |
48307739 |
ccctggaaaaagctttgacacaaaattgaaccagaaatgcaatgatggtcctaaaatgatcatcccatatcccgccatgcgtaaagtccttataaaatca |
48307838 |
T |
|
| Q |
101 |
aaagattttgaagattgccgctcaatagtctgaaggaaatattaaatatcatttgagtatgagagaaacagcagaatgagcatgaaatatgcaatatcaa |
200 |
Q |
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| T |
48307839 |
aaagattttgaagattgccgctcaatagtctgaaggaaatattaaataccatttgagtatgagagaaacagcagaatgagcatgaaatatgcaatatcaa |
48307938 |
T |
|
| Q |
201 |
accatgcaaagccacttaatgagacaaatggtatgcaaataaaagactcaagaattcgtcaagtgagtctgcacaagaacctgaaacaatatatgcattt |
300 |
Q |
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| T |
48307939 |
accatgcaaagccacttaatgagacaaatggtatgtaaataaaagactcaagaattcgtcaagtgagtctgcacaagaacctgaaacaatatatgcatta |
48308038 |
T |
|
| Q |
301 |
gaagaattgaagagggactcaattttgaggctcctaaaaaacaccacctgtgtaaaattttgttgaaagggtgtagcaatgtatcccattcaaaatacag |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48308039 |
gaagaattgaagagggactcgattttgaggctcctaaaaaacaccacctgtgtaaaattttgttgaaagggtgtagcaatgtatcccattcaaaatacag |
48308138 |
T |
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| Q |
401 |
gcaccttcaagatcttgtgttaccggcatatccaaaacaaagag |
444 |
Q |
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| T |
48308139 |
gcaccttcaagatcttgtgttactggcatatccaaaacaaagag |
48308182 |
T |
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