View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_high_11 (Length: 476)
Name: NF6745_high_11
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 4 - 457
Target Start/End: Original strand, 39482158 - 39482607
Alignment:
| Q |
4 |
gctggtggtgcgtccagtacatgtaacatgttggtctcaagttagcagcacaggtttgatctgactaggaagcttgaaacaggaatgaatgtattaacac |
103 |
Q |
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| T |
39482158 |
gctggtggtgcgtccagtacatgtaacatgttggtctcaaattagcagcacaggtttgatctgactaggaagcttgaaacaggaatg----tattaacac |
39482253 |
T |
|
| Q |
104 |
agtcttaaaatataataatgtttttatattttcacaataatgattgatgtatagtaaacagaaaggtttattatatatagtaaacataaaggtttctcgg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39482254 |
agtcttaaaatataataatgtttttatattttcacaataatgattgatgtatagtaaacagaaaggtttattatatatagtaaacataaaggtttctcgg |
39482353 |
T |
|
| Q |
204 |
acacaaaatctgacatcaacacaccgtatgtatatgcgattaacaacnnnnnnnctctctcccctccgttccaaatttcagcattatacacatcctagtt |
303 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39482354 |
acacaaaatctgacatcaacacaccgaatgtatatgcgattaacaactttttttctctctgccctccgttccaaatttcagcattatacacatcctagtt |
39482453 |
T |
|
| Q |
304 |
gtattttatacagtgtcggatatggggtccaatttttgtgtgtaaaaataacacaccccatagttaaataataaagagacatagtaagacattaatgcat |
403 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39482454 |
gtattttatacagtgtaggatatggggtccaatttttgtgtgtaaaaataacacaccccatagttaaataataaagagacatagtaagacattaatgcat |
39482553 |
T |
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| Q |
404 |
tactgactatgaagagacattgggatcagcttcacacaaggaatacatgagtgc |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39482554 |
tactgactatgaagagacattgggatcagcttcacacaaggaatacatgagtgc |
39482607 |
T |
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