View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_high_15 (Length: 403)
Name: NF6745_high_15
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 4845707 - 4845324
Alignment:
| Q |
1 |
ccaacattggcggtcattgcattaaagtgtccatccattgaaatagctatcatcgacgaaatcactatctataagccaggttttgataatgtagtataac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845707 |
ccaacattggctgtcattgcattaaagtatccatccattgaaatagccgtcatcgacgaaatcactatctataagccaggttttgataatgtagtataac |
4845608 |
T |
|
| Q |
101 |
aatgtcgcggcacaaacattttcttccacaccgatgttgaaaaacatgactatgaatctgaaagtgttgtatccctcagcacactgactataacttgcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845607 |
aatgtcgcggcacaaacattttcttccacactgatgttgaaaaacatgactatgaatctgaaagtgttgtatccctcagcacactgactataacttgcgc |
4845508 |
T |
|
| Q |
201 |
tcttggtgagtgcgactcagatgatc---gctgatgtctcaaaaacccacaaaattgttgtatataaaccaacttttcttgtcaatactactgaagctat |
297 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845507 |
tcttggagagcgcgactcagatgatcgctgctgatgtctcaaaaacccacaaaattgttgtatataaaccaacttttcttgtcaatactactgaagctat |
4845408 |
T |
|
| Q |
298 |
atagaaaaggttcaagatctgtcaaatcctgaattccttgctgattgatggaactgcaactcaagaccttctcaatccagactgagtt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4845407 |
atagaaaaggttcaagatctgtcaaatcctgaattccttgc----tgatggaactgcaactaaagaccttctcaatccagactgagtt |
4845324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 4804015 - 4803919
Alignment:
| Q |
65 |
ctatctataagccaggttttgataatgtagtataacaatgtcgcggcacaaacattttcttccacaccgatgttgaaaaacatgactatgaatctga |
161 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| | |||||||| ||| || || ||||| |||| |||||||||||||||| ||||||| |||| |
|
|
| T |
4804015 |
ctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtaccttgtcttcaacactgatgttgaaaaacatgtctatgaagctga |
4803919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 4814826 - 4814731
Alignment:
| Q |
231 |
atgtctcaaaaacccacaaaattgttgtatataaaccaacttttcttgtcaatactactgaagctatatagaaaaggttcaagatctgtcaaatcc |
326 |
Q |
| |
|
||||||||||| | |||||||||||||| | || ||||| ||| | |||| ||| ||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
4814826 |
atgtctcaaaatctgacaaaattgttgtagaggaatcaactattcctatcaaaactgctgaagctatagagaaaaggatcaaattctgtcaaatcc |
4814731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4807675 - 4807635
Alignment:
| Q |
1 |
ccaacattggcggtcattgcattaaagtgtccatccattga |
41 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
4807675 |
ccaacaatggcggtcattgcatttaattgtccatccattga |
4807635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University