View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_high_21 (Length: 339)
Name: NF6745_high_21
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 43532986 - 43533286
Alignment:
| Q |
16 |
gacatcatgccaaggatgttccaacacaatgtgaaaccttccttcctggtaagtatccatcttctcgccgaaccgcttcattctcctcttattcatcatc |
115 |
Q |
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| T |
43532986 |
gacatcatgccaaggatgttccaacacaatgtgaaaccttccttcccggtaagtatccatcttctcgccgaaccgcttcattctcctcttattcatcatc |
43533085 |
T |
|
| Q |
116 |
actttcaccttcatcttcttcccttgaatcattctattttcttgatgatcctcttctaagccctgccactccacttagattctcaggtgtcccattttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533086 |
actttcaccttcatcttcttcccttgaatcattctattttcttgatgatcctcttctaagccctgccactccacttagattctcaggtgtcccattttct |
43533185 |
T |
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| Q |
216 |
tgggaacatttacctggaattcccaagaaacacaataattccaagaaaaatcataaatcatccatgaaactattaccattaccccctcctactattacta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533186 |
tgggaacatttacctggaattcccaagaaacacaataattccaagaaaaatcataaatcatccatgaaactattaccattaccccctcctactattacta |
43533285 |
T |
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| Q |
316 |
c |
316 |
Q |
| |
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| T |
43533286 |
c |
43533286 |
T |
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