View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_high_27 (Length: 292)

Name: NF6745_high_27
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_high_27
NF6745_high_27
[»] chr7 (5 HSPs)
chr7 (3-273)||(6567489-6567759)
chr7 (3-112)||(6582167-6582275)
chr7 (139-252)||(6066567-6066680)
chr7 (118-195)||(36713655-36713732)
chr7 (139-185)||(6650294-6650340)
[»] chr6 (1 HSPs)
chr6 (118-241)||(10231365-10231488)
[»] scaffold0495 (1 HSPs)
scaffold0495 (118-241)||(8088-8209)
[»] scaffold0001 (1 HSPs)
scaffold0001 (118-239)||(67401-67522)
[»] chr2 (1 HSPs)
chr2 (118-251)||(14463087-14463217)
[»] chr4 (1 HSPs)
chr4 (121-254)||(15994184-15994317)
[»] scaffold0193 (1 HSPs)
scaffold0193 (124-252)||(24575-24703)
[»] chr5 (2 HSPs)
chr5 (118-195)||(42898670-42898746)
chr5 (118-175)||(14051109-14051166)
[»] chr8 (2 HSPs)
chr8 (118-252)||(20086513-20086647)
chr8 (119-204)||(33468094-33468179)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 6567759 - 6567489
Alignment:
Q  3 gataattaacgaaccaacaaataattagcttacttgacttaattataattttttgaaatattccttcttttaaaaaatgactttgactatggagagaggg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6567759 gataattaacgaaccaacaaataattagcttacttgacttaattataattttttgaaatattccttcttttaaaaaatgactttgactatggagagaggg 6567660  T
Q  103 attgagcaacctacaaattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtc 202  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6567659 attgagcaacatacaaattttttattttctttcgcctactgtgtagtagcttgtctgagttattgtaacatgtgaacattttatcttcctttgatacgtc 6567560  T
Q  203 ttatactgatggaacttttgttggtttttaatatatttgcttagctttttaagcacattttcatttattat 273  Q
    || || || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6567559 ttgtattggtggaacttttgttgatttttaatatatttgcttagctttttaagcacattttcatttattat 6567489  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 6582275 - 6582167
Alignment:
Q  3 gataattaacgaaccaacaaataattagcttacttgacttaattataattttttgaaatattccttcttttaaaaaatgactttgactatggagagaggg 102  Q
    |||||||||  |||||| ||||||||||||||||||||  | |||||||||||||||||| ||||||||||| |||||||||||||||||  ||| || |    
T  6582275 gataattaataaaccaaaaaataattagcttacttgaccaagttataattttttgaaataatccttctttta-aaaatgactttgactatccagaaagtg 6582177  T
Q  103 attgagcaac 112  Q
    ||||||||||    
T  6582176 attgagcaac 6582167  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 6066680 - 6066567
Alignment:
Q  139 tactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatactgatggaacttttgttggtttttaatatat 238  Q
    |||||| |||||||||| ||| |||||||||| ||||  |||||||| ||||||||| |||  ||| |||||  | | ||||||||||||||||||||||    
T  6066680 tactgtatagtagcttgactgtgttattgtaatatctcgacattttagcttcctttggtacaccttgtactggggaagcttttgttggtttttaatatat 6066581  T
Q  239 ttgcttagcttttt 252  Q
    |  ||||| |||||    
T  6066580 tcccttagtttttt 6066567  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 36713732 - 36713655
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 195  Q
    |||||||||||||| ||||  |||||||||||| ||||| |  ||||| |||||||||||||||||||  ||||||||    
T  36713732 aattttttattttccttcgactactgtgtagtaccttgtttatgttatcgtaacatctgaacattttaatttcctttg 36713655  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 6650340 - 6650294
Alignment:
Q  139 tactgtgtagtagcttgtctgagttattgtaacatctgaacatttta 185  Q
    |||||||||| ||||||| || |||||||||||||||||| ||||||    
T  6650340 tactgtgtagcagcttgtttgtgttattgtaacatctgaatatttta 6650294  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 10231365 - 10231488
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatactgatggaa- 216  Q
    ||||||||||||| ||||   || |||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||  ||| |||| || |||     
T  10231365 aattttttattttgtttcagctattgtgcagtagcttgtcagtgttattgtaacatctgaacattttagcttcctttgatacaccttgtact-atagaag 10231463  T
Q  217 cttttgttggtttttaatatatttg 241  Q
     ||||||||||||||||||||||||    
T  10231464 tttttgttggtttttaatatatttg 10231488  T

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Target: scaffold0495 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 8088 - 8209
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatactgatggaac 217  Q
    ||||||||||||| ||||   || |||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||  ||| |||| || |||     
T  8088 aattttttattttgtttcagctattgtgcagtagcttgtcagtgttattgtaacatctgaacattttagcttcctttgatacaccttgtact-atagaag 8186  T
Q  218 ttttgttggtttttaatatatttg 241  Q
    ||||||||| ||||||||||||||    
T  8187 ttttgttgg-ttttaatatatttg 8209  T

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Target: scaffold0001 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 67522 - 67401
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatactgatggaac 217  Q
    ||||||||||||||| | |  |||||||||||||||||||||  ||||||||||||||||||||||||  || ||||| ||  |||| |||    |||      
T  67522 aattttttattttctctaggctactgtgtagtagcttgtctgtattattgtaacatctgaacattttagttttctttggtagatcttgtacaagaggatt 67423  T
Q  218 ttttgttggtttttaatatatt 239  Q
    ||||||||||||||||||||||    
T  67422 ttttgttggtttttaatatatt 67401  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 14463087 - 14463217
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatactgatggaac 217  Q
    |||||||||||||||||||  |||||||||||||| |||||| ||| |||||||||||| ||| |||| |||||||||| ||  | | |||| ||  | |    
T  14463087 aattttttattttctttcggctactgtgtagtagcatgtctgtgtt-ttgtaacatctggaca-tttaacttcctttgacacaccatgtactaat-tagc 14463183  T
Q  218 ttttgttggtttttaatatatttgcttagctttt 251  Q
    ||||||| |||||||||||||| |||||||||||    
T  14463184 ttttgttagtttttaatatattcgcttagctttt 14463217  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 254
Target Start/End: Original strand, 15994184 - 15994317
Alignment:
Q  121 tttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatact-gatggaactt 219  Q
    ||||||||||||||||  |||| |||||||||||| ||| ||||||||||||| ||||| |||||| || ||||| |||  ||| |||| ||| |  |||    
T  15994184 tttttattttctttcggctactctgtagtagcttgactgtgttattgtaacatttgaactttttatttttctttggtacaccttgtactagat-gcgctt 15994282  T
Q  220 ttgttggtttttaatatatttgcttagctttttaa 254  Q
    || |||||||||||||||||  | |||||||||||    
T  15994283 ttattggtttttaatatattcacctagctttttaa 15994317  T

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Target: scaffold0193 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 24703 - 24575
Alignment:
Q  124 ttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatact-gatggaacttttg 222  Q
    |||||||||||||  ||  ||||||||||||| |||  |||||||||||||  ||||||| | |||  |||||||| | ||||||| |||| ||||||||    
T  24703 ttattttctttcggctatcgtgtagtagcttgactgtcttattgtaacatcataacatttaagctttatttgatacattttatactagatg-aacttttg 24605  T
Q  223 ttggtttttaatatatttgcttagcttttt 252  Q
    ||||||||||| |||||  |||||||||||    
T  24604 ttggtttttaacatattctcttagcttttt 24575  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 42898670 - 42898746
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttg 195  Q
    |||||||||||||| ||||  ||||||||| ||||||||||  ||||||||||||| ||||||||||| |||||||||    
T  42898670 aattttttattttcgttcggctactgtgtaatagcttgtctttgttattgtaacat-tgaacattttagcttcctttg 42898746  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 14051109 - 14051166
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatct 175  Q
    |||||||||||||||||||   | | |||||||||||||||  |||||||||||||||    
T  14051109 aattttttattttctttcgacaattatgtagtagcttgtctatgttattgtaacatct 14051166  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 252
Target Start/End: Original strand, 20086513 - 20086647
Alignment:
Q  118 aattttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtcttatactgatggaac 217  Q
    |||| ||||||||| ||||  |||||||||||| ||| |||| | | ||||| ||||| ||||||||| ||| |||||||||  ||| ||||   |||||    
T  20086513 aattctttattttccttcgactactgtgtagtaacttatctgtgcttttgtatcatctaaacattttaactttctttgatacaccttgtactagaggaac 20086612  T
Q  218 ttttgttggtttttaatatatttgcttagcttttt 252  Q
    ||| |||| |||||||| |||||| ||| ||||||    
T  20086613 tttagttgatttttaatttatttgtttaacttttt 20086647  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 33468179 - 33468094
Alignment:
Q  119 attttttattttctttcgcatactgtgtagtagcttgtctgagttattgtaacatctgaacattttatcttcctttgatacgtctt 204  Q
    |||||||||||| ||||   || ||| |||||| |||| || ||||||||||||||||| ||||||| ||||||||||||| ||||    
T  33468179 attttttattttatttcaactattgtatagtagtttgtttgtgttattgtaacatctgaccattttagcttcctttgatacatctt 33468094  T

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