View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_high_3 (Length: 683)
Name: NF6745_high_3
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 23 - 529
Target Start/End: Complemental strand, 32372031 - 32371530
Alignment:
| Q |
23 |
gacacaaagcaacagtatcacacagagatttaagagaaacacaaagactagagattagagaagatattaggatacaactcttagaattcaataaactgtg |
122 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372031 |
gacacaaagcaacagtgtcacacagagatgtaagagaaacacaaagactagagattagagaagatattaggatacaactcttagaattcaataaactgtg |
32371932 |
T |
|
| Q |
123 |
aggcggtactgcgatttgggcttttttagnnnnnnnttcgaactccataatcgtgagcttttctcgcatctgtccagaaaacgattatgttggcgagcca |
222 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | |||||| |
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| T |
32371931 |
aggcggtactgcgatttgggcttttttagaaaaaaattcgaactccataatcgtgagtttttctcgcatctgtccagaaaacgaatatgttcgtgagcca |
32371832 |
T |
|
| Q |
223 |
acttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcgagttttccaaccatgatataaatacaattccaaacagtatttatt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32371831 |
acttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcaagctttttaaccatgatataaatacaattccaaacagtatttatt |
32371732 |
T |
|
| Q |
323 |
tattcatgaattgcagcaattccaaggtgaaaataaggcagagttatgcctttgaaagcataaaacctaacattttttgatgcataaaaggccagtcaat |
422 |
Q |
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| T |
32371731 |
tattcatgaattgcagcaattccaaggtgaaaataaggcagagttatgcctttgaaagcataaaagctaacat-ttttgatgcataaaaggccagtcaat |
32371633 |
T |
|
| Q |
423 |
ttgtgtaaagagtacctcacaaactagattcnnnnnnnnnnnccttctagtgaacgatattatccagcttctagtgattgataatcacaatcttagtctc |
522 |
Q |
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| T |
32371632 |
ttgtgtaaagagtacctcacaaactagatt----ttttttttccttctagtgatcgatattatccagcttctagtgatcgataatcacaatcttagtctc |
32371537 |
T |
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| Q |
523 |
tagacat |
529 |
Q |
| |
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| ||||| |
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| T |
32371536 |
ttgacat |
32371530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 202 - 444
Target Start/End: Original strand, 32364989 - 32365224
Alignment:
| Q |
202 |
aacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcgagttttccaaccatgatataaata |
301 |
Q |
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|||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
32364989 |
aacgattatgttcgcgagtcaacttgtatgggtagctggactcgtaaacttggccaactctacgagctgacttgcgagtttgctaaccatgatataaata |
32365088 |
T |
|
| Q |
302 |
caattccaaac--agtatttatttattcatgaattgcagcaattccaaggtgaaaataaggcagagttatgcctttgaaagcataaaacctaacattttt |
399 |
Q |
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| T |
32365089 |
caattccagacagagtattta-ttattcatgaatt---gcaattccaaggtgaaaatagggcatagt-----ctttgaaagcataaaaggtaacattttt |
32365179 |
T |
|
| Q |
400 |
tgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaa |
444 |
Q |
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| T |
32365180 |
taatgcataaaaggccagtcaatttgtgtaaagagtgcctcacaa |
32365224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 479 - 624
Target Start/End: Complemental strand, 32357192 - 32357047
Alignment:
| Q |
479 |
atattatccagcttctagtgattgataatcacaatcttagtctctagacatgttttggaggaa-aaaataagctgacccactcaaggctatttgacataa |
577 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| | |
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| T |
32357192 |
atattatccagcttctagtgatagatagtcacaatcttagtttctagacatgttttggaggaaaaaaataacctga-ccactcaaggttatttgacatca |
32357094 |
T |
|
| Q |
578 |
taaattgagaatattaaacaatctcacaatgttacaacacttccttt |
624 |
Q |
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| T |
32357093 |
taaattgtgaatattgaaccatctcacaatgttacaacacttccttt |
32357047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 569 - 670
Target Start/End: Complemental strand, 32371536 - 32371429
Alignment:
| Q |
569 |
ttgacataataaattgagaatattaaacaatctcacaatgttacaacacttcctttc------gagcctcactataatactaaggttgttgccttctgac |
662 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
32371536 |
ttgacataataaattgtgaatattaaacaatctcacaatgttacaacacttcctttcgagggagagcctcagtataatactaaggttgttgccttctgac |
32371437 |
T |
|
| Q |
663 |
ctagatat |
670 |
Q |
| |
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|||||||| |
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| T |
32371436 |
ctagatat |
32371429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 299 - 449
Target Start/End: Complemental strand, 32357484 - 32357335
Alignment:
| Q |
299 |
atacaattccaaacag--tatttatttattcatgaattgcagcaattccaaggtgaaaataaggcagagttatgcctttgaaagcataaaacctaacatt |
396 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||||||| |||| | |||||| |||| |||||| |||| |||| ||||||||||||| || |
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| T |
32357484 |
atacaattacaaacagagtatttctttattcatgaattgca---attctgggatgaaaagaaggaagagttctgccggtgaaggcataaaacctaaactt |
32357388 |
T |
|
| Q |
397 |
ttttgatgcataaaaggccagtcaatttgtgtaaagagtacctcacaaactag |
449 |
Q |
| |
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| | ||||||||||||||||||| || ||||||||| ||| ||||||||||| |
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| T |
32357387 |
ctctaatgcataaaaggccagtcagttggtgtaaagaatacttcacaaactag |
32357335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 569
Target Start/End: Original strand, 32364860 - 32364939
Alignment:
| Q |
488 |
agcttctagtgattgataatcacaatcttagtctctagacatgttttggaggaaaaaataagctgacccactcaaggctatt |
569 |
Q |
| |
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||||||||||||| |||| | | ||||||| | ||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
32364860 |
agcttctagtgatagatagttagaatcttaatttctagac--gttttggaggaaaaaataacctgacccactcaaggttatt |
32364939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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