View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_high_37 (Length: 238)

Name: NF6745_high_37
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_high_37
NF6745_high_37
[»] chr6 (1 HSPs)
chr6 (46-211)||(31169128-31169293)
[»] chr8 (6 HSPs)
chr8 (91-211)||(16843271-16843387)
chr8 (52-177)||(27289840-27289964)
chr8 (106-169)||(9066928-9066991)
chr8 (126-177)||(31024516-31024567)
chr8 (46-81)||(33367333-33367368)
chr8 (129-175)||(39902999-39903045)
[»] chr4 (2 HSPs)
chr4 (49-172)||(27991080-27991202)
chr4 (91-174)||(9021634-9021717)
[»] chr3 (1 HSPs)
chr3 (93-178)||(32135147-32135232)
[»] chr2 (1 HSPs)
chr2 (95-177)||(28646203-28646285)
[»] chr5 (1 HSPs)
chr5 (91-176)||(12849620-12849704)
[»] chr7 (1 HSPs)
chr7 (129-177)||(37605682-37605730)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 31169293 - 31169128
Alignment:
Q  46 aaaaacaaataacattatattcatagaaatttgaagnnnnnnnnntttaagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacat 145  Q
    |||| |||||||||||||||||||||||||||||||         |||||||||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  31169293 aaaagcaaataacattatattcatagaaatttgaagaaaaaagaatttaagatacctataatcaataaagtagttacctctgggatcaaacttgcaacat 31169194  T
Q  146 gaattaaaaatctacaactctccatttaactattaattaattgagctagatgcaaagatgtttaaa 211  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  31169193 gaactaaaaatctacaactctccatttaactattaattaactgagctagatgcgaagatgtttaaa 31169128  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 16843387 - 16843271
Alignment:
Q  91 tttaagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaattaaaaatctacaactctccatttaactattaattaattgag 190  Q
    |||||||||||||||||||||||| ||| ||| | || ||||||| |||||| ||||| ||||| ||||||| |||| |||||||||||    |||||||    
T  16843387 tttaagatacgtataaccaataaaatagctacttttgagatcaaacttgcaatatgaactaaaagtctacaattctctatttaactatt----aattgag 16843292  T
Q  191 ctagatgcaaagatgtttaaa 211  Q
    ||||| ||||| |||||||||    
T  16843291 ctagacgcaaacatgtttaaa 16843271  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 27289964 - 27289840
Alignment:
Q  52 aaataacattatattcatagaaatttgaagnnnnnnnnntttaagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaatta 151  Q
    ||||||||| ||||||||||||||||||||         | |||||||||||||||||||||||||  ||||| || ||||||| |||||||||||| ||    
T  27289964 aaataacatcatattcatagaaatttgaagaagaaaaa-tgtaagatacgtataaccaataaagtatctacctttgagatcaaacttgcaacatgaacta 27289866  T
Q  152 aaaatctacaactctccatttaacta 177  Q
    ||| |||| |||||| ||||||||||    
T  27289865 aaagtctataactcttcatttaacta 27289840  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 9066991 - 9066928
Alignment:
Q  106 accaataaagtagttacctctgggatcaaatttgcaacatgaattaaaaatctacaactctcca 169  Q
    ||||||||||||| ||||| |||||||||||||  ||||| || ||||| ||||||||||||||    
T  9066991 accaataaagtagctacctttgggatcaaatttataacataaactaaaagtctacaactctcca 9066928  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 31024516 - 31024567
Alignment:
Q  126 tgggatcaaatttgcaacatgaattaaaaatctacaactctccatttaacta 177  Q
    |||||||||| |||||||||||| || || ||||||| ||||||||||||||    
T  31024516 tgggatcaaacttgcaacatgaactataagtctacaattctccatttaacta 31024567  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 33367333 - 33367368
Alignment:
Q  46 aaaaacaaataacattatattcatagaaatttgaag 81  Q
    |||||||||||||||||||||||||||||| |||||    
T  33367333 aaaaacaaataacattatattcatagaaatatgaag 33367368  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 39902999 - 39903045
Alignment:
Q  129 gatcaaatttgcaacatgaattaaaaatctacaactctccatttaac 175  Q
    ||||||| ||||||||| || || |||||||||||||||||||||||    
T  39902999 gatcaaacttgcaacataaactacaaatctacaactctccatttaac 39903045  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 27991080 - 27991202
Alignment:
Q  49 aacaaataacattatattcatagaaatttgaagnnnnnnnnntttaagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaa 148  Q
    |||||||||||| |||||||||||||| |||||         ||||| |||| |||||||||||||||||||| || || |||||||||||| |||| ||    
T  27991080 aacaaataacatcatattcatagaaatctgaagaaaaaagaatttaacatacatataaccaataaagtagtta-ctttgtgatcaaatttgctacataaa 27991178  T
Q  149 ttaaaaatctacaactctccattt 172  Q
    |||||| | ||||| |||| ||||    
T  27991179 ttaaaattttacaattctctattt 27991202  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 9021717 - 9021634
Alignment:
Q  91 tttaagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaattaaaaatctacaactctccatttaa 174  Q
    |||||||||| || ||| |||||| ||| || || |||||||||| |||||||||||| || ||||||||||||||| ||||||    
T  9021717 tttaagatacataaaactaataaaatagctatctttgggatcaaacttgcaacatgaactataaatctacaactctctatttaa 9021634  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 32135232 - 32135147
Alignment:
Q  93 taagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaattaaaaatctacaactctccatttaactat 178  Q
    ||||||| |||||||||||||| |||||   | |||| ||||| ||||||||| || || || |||||||||||||||||||||||    
T  32135232 taagatatgtataaccaataaaatagttttatttggggtcaaacttgcaacataaactacaagtctacaactctccatttaactat 32135147  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 28646285 - 28646203
Alignment:
Q  95 agatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaattaaaaatctacaactctccatttaacta 177  Q
    ||||| |||||||||||||| ||| ||| | |  |||||||  |||||||| ||| |||| ||||||||||||||||||||||    
T  28646285 agatatgtataaccaataaaatagctacttttaagatcaaacatgcaacataaatcaaaagtctacaactctccatttaacta 28646203  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 12849704 - 12849620
Alignment:
Q  91 tttaagatacgtataaccaataaagtagttacctctgggatcaaatttgcaacatgaattaaaaatctacaactctccatttaact 176  Q
    ||||||||||||||||  |||||||||| ||| | ||| || ||| |||| ||||||| || ||||| ||||||||||| ||||||    
T  12849704 tttaagatacgtataattaataaagtagctacat-tggtattaaacttgctacatgaactacaaatcaacaactctccacttaact 12849620  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 37605730 - 37605682
Alignment:
Q  129 gatcaaatttgcaacatgaattaaaaatctacaactctccatttaacta 177  Q
    ||||||| |||||| ||||||||||| |||||||||||| || ||||||    
T  37605730 gatcaaacttgcaagatgaattaaaattctacaactctctatataacta 37605682  T

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