View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_high_41 (Length: 220)

Name: NF6745_high_41
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_high_41
NF6745_high_41
[»] chr8 (4 HSPs)
chr8 (104-211)||(32848022-32848129)
chr8 (12-191)||(11364555-11364737)
chr8 (7-48)||(32847984-32848025)
chr8 (41-205)||(9617871-9618043)
[»] chr7 (7 HSPs)
chr7 (25-193)||(29367291-29367463)
chr7 (46-195)||(32471143-32471301)
chr7 (8-189)||(42863670-42863854)
chr7 (41-96)||(29346783-29346838)
chr7 (124-208)||(35199381-35199465)
chr7 (8-86)||(3756740-3756816)
chr7 (43-86)||(39773360-39773403)
[»] chr5 (1 HSPs)
chr5 (8-195)||(34272322-34272511)
[»] chr3 (5 HSPs)
chr3 (98-207)||(531157-531268)
chr3 (98-207)||(564112-564223)
chr3 (12-68)||(564224-564280)
chr3 (12-68)||(531269-531325)
chr3 (102-195)||(46505965-46506057)
[»] chr1 (3 HSPs)
chr1 (25-155)||(29274555-29274690)
chr1 (123-193)||(49138139-49138208)
chr1 (43-86)||(12900877-12900920)
[»] chr6 (2 HSPs)
chr6 (10-211)||(29181546-29181753)
chr6 (98-148)||(15091898-15091948)
[»] chr4 (3 HSPs)
chr4 (42-188)||(4848782-4848930)
chr4 (115-195)||(45610619-45610699)
chr4 (44-86)||(49272661-49272703)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 32848022 - 32848129
Alignment:
Q  104 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccac 203  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32848022 agatgagagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccac 32848121  T
Q  204 atgttcat 211  Q
    ||||||||    
T  32848122 atgttcat 32848129  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 11364555 - 11364737
Alignment:
Q  12 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt---gagggagagatg 108  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||||||    | || |||| |    
T  11364555 ttggtgttcttagtacataaaagggaaaggaaaagatagaagaagaccaagtcgaaagacttaagccattactctacttgagagtaccaaaggggagagg 11364654  T
Q  109 agagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttagg 191  Q
    ||| | |   ||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  11364655 agatactatgtcatttttcttcataccccttagtgatcatcatttctctatttatgcacaatccaagcttccttaattttagg 11364737  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 32847984 - 32848025
Alignment:
Q  7 gagagttggtgttcttaatacataaaagagataggaaaagat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32847984 gagagttggtgttcttaatacataaaagagataggaaaagat 32848025  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 9617871 - 9618043
Alignment:
Q  41 gaaaagatagaagaagactaagtccaaagacttaagccattactc----ttcaagagagt----gagggagagatgagagagttcatcagttttcttcat 132  Q
    ||||||||||||||||||||| | |||| ||||||| ||||||||    | | |||||||     ||| ||||| || ||| ||| ||| ||||||||||    
T  9617871 gaaaagatagaagaagactaaatacaaaaacttaagtcattactccctatactagagagtaccacaggaagagaggaaagacttcttcatttttcttcat 9617970  T
Q  133 acccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacat 205  Q
    ||  ||| ||| |||||  ||  || ||||||||||||| ||||||| |||||| ||||||||  ||||||||    
T  9617971 acttattgttgttcatccttttcctgtttatgcacaatccaaacttcattgattctaggatcactagccacat 9618043  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 29367291 - 29367463
Alignment:
Q  25 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt----gagggagagatgagagagttcatc 120  Q
    ||||||||||||| ||  || |||||||||||||||||||| |||||||||| ||||||||| | |||||||     || ||||||||| ||| ||||||    
T  29367291 tacataaaagagaaagagaaggatagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagagagatgatagacttcatc 29367390  T
Q  121 agttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 193  Q
    | ||||||||||||||| | |||||||||| ||| ||||||||| | || | ||| ||| || ||||||||||    
T  29367391 acttttcttcatacccactgttgatcatcatttcactatttatgtataacccaaagttctttaattttaggat 29367463  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 32471143 - 32471301
Alignment:
Q  46 gatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagatgagagagttcatcagttttcttcataccca---- 137  Q
    |||||||||||||||||| ||||||| ||||  |||||||   | ||||||     ||||||||| |||||| ||||||| ||||||||||| ||         
T  32471143 gatagaagaagactaagttcaaagacataagttattactcgcaaggagagtaccaaagggagagaggagagacttcatcaattttcttcataacccggcc 32471242  T
Q  138 -ttattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 195  Q
     | | ||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  32471243 ctcagtgatcatcatttctctatttatgcacaatccaagcttccttgattttaggatca 32471301  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 42863854 - 42863670
Alignment:
Q  8 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 103  Q
    ||||||||| |||||| |||| | |||| | || |||||||||||||||||  ||||| |||||||||| ||||||||| | |  |||||    | ||||    
T  42863854 agagttggtattcttagtaca-ataagaaaaagaaaaagatagaagaagacctagtcctaagacttaagtcattactctaccaatgagtgtcaaaaggag 42863756  T
Q  104 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgatttta 189  Q
    ||| |||||| ||  ||| |||||||||||||  ||| ||| ||||| | |||||||||||||||||| || ||||||| ||||||    
T  42863755 agaagagagacttggtcatttttcttcatacctcttagtgaccatcattcctctatttatgcacaatctaagcttccttaatttta 42863670  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 29346783 - 29346838
Alignment:
Q  41 gaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt 96  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||  ||||||||    
T  29346783 gaaaagatagaagaagacttagtccaaagacttaagtcattaccctcaaagagagt 29346838  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 35199381 - 35199465
Alignment:
Q  124 tttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgtt 208  Q
    |||||||||| | |||||||||||| | |||| ||||||||||||| | ||| ||||||  ||||| |||||  |||||||||||    
T  35199381 tttcttcatatcaattattgatcataatttctttatttatgcacaacccaaatttccttagttttaagatcactagccacatgtt 35199465  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 3756740 - 3756816
Alignment:
Q  8 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactct 86  Q
    |||||||||||||||| ||||||||| | || |  ||||||||||||||||  ||||| | |||||||| |||||||||    
T  3756740 agagttggtgttcttagtacataaaaaaaatcg--aaagatagaagaagacctagtcctaggacttaagtcattactct 3756816  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 39773403 - 39773360
Alignment:
Q  43 aaagatagaagaagactaagtccaaagacttaagccattactct 86  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||    
T  39773403 aaagatagaagaagacttagtctaaagacctaagccattactct 39773360  T

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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 34272511 - 34272322
Alignment:
Q  8 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 103  Q
    ||||||||||||||||| | |||||| ||| ||| ||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||     | ||||    
T  34272511 agagttggtgttcttaaaagataaaa-agaaagggaaatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatggag 34272414  T
Q  104 agatgagagag-ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 195  Q
    ||| |||| |  ||||||| ||||||||||||||||||||  | |||| || ||||||||||||||||| || | ||||||||||||||||||    
T  34272413 aga-gagaaaaattcatcaattttcttcatacccattattatttatcatttttctatttatgcacaatctaagcatccttgattttaggatca 34272322  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 531268 - 531157
Alignment:
Q  98 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 195  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  531268 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 531169  T
Q  196 tgagccacatgt 207  Q
    | |||| |||||    
T  531168 ttagccgcatgt 531157  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 564223 - 564112
Alignment:
Q  98 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 195  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  564223 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 564124  T
Q  196 tgagccacatgt 207  Q
    | |||| |||||    
T  564123 ttagccgcatgt 564112  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 564280 - 564224
Alignment:
Q  12 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 68  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||    
T  564280 ttggtgttcttagtgcataaaagagaaaggaaaagatagaagaagaccaagtccaaa 564224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 531325 - 531269
Alignment:
Q  12 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 68  Q
    ||||||| |||| || |||||||||| |||||||||||||||||||| |||||||||    
T  531325 ttggtgtccttagtagataaaagagaaaggaaaagatagaagaagaccaagtccaaa 531269  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 46506057 - 46505965
Alignment:
Q  102 agagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 195  Q
    ||||| |||||| ||||||| | ||||||| ||||| |||||||| ||  ||| |||||||||||| ||| ||  |||||| ||||||||||||    
T  46506057 agagaggagagacttcatcaatattcttcacacccactattgatcctcctttcactatttatgcac-atccaaggttcctttattttaggatca 46505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 29274690 - 29274555
Alignment:
Q  25 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt-------gagggagagatgagagagttc 117  Q
    ||||||||||| | || ||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||       |||||||||  |||||| |||    
T  29274690 tacataaaagataaagaaaaagatagaagaaggctaagtccaaggacttaaaccattactctactagagagtatcaaaggagggagag--gagagacttc 29274593  T
Q  118 atcagttttcttcatacccattattgatcatcaattct 155  Q
    |||| | || |||||||| |||||||||||||| ||||    
T  29274592 atcattatttttcataccaattattgatcatcatttct 29274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 49138208 - 49138139
Alignment:
Q  123 ttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 193  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| |||||| || ||||||| ||||||||||    
T  49138208 ttttcttcatacccattattgat-atcattttcctatttatgtacaatccaagcttcctttattttaggat 49138139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 12900920 - 12900877
Alignment:
Q  43 aaagatagaagaagactaagtccaaagacttaagccattactct 86  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  12900920 aaagatagaagaagacttagttcaaagacctaagccattactct 12900877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 29181753 - 29181546
Alignment:
Q  10 agttggtgttcttaatacataaaaga---gataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----aggga 102  Q
    |||||||||||||| |||||||||||   || | | ||||||| ||||| ||||||||| |||||| ||| ||||||||| | | |||||     |||||    
T  29181753 agttggtgttcttagtacataaaagaagagaaaaggaaagatacaagaaaactaagtcccaagact-aagtcattactctactaaagagtactaaaggga 29181655  T
Q  103 gagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagcca 202  Q
    |||| |||||| | || || | |||||||  || |||||||||||| | ||  ||||||||||| |  | ||||||| |||||||||||||||  |||||    
T  29181654 gagaggagagactccagcaatattcttcacccctattattgatcattattttcctatttatgcatatcccaaacttctttgattttaggatcactagcca 29181555  T
Q  203 catgttcat 211  Q
    | |||||||    
T  29181554 cttgttcat 29181546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 15091898 - 15091948
Alignment:
Q  98 agggagagatgagagagttcatcagttttcttcatacccattattgatcat 148  Q
    ||||||||||||| || ||||||| ||||||||||| ||| ||||||||||    
T  15091898 agggagagatgagtgacttcatcaattttcttcatatccactattgatcat 15091948  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 4848930 - 4848782
Alignment:
Q  42 aaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt--gagggagagatgagagagttcatcagttttcttcatacccatt 139  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||| | |||||||||   |  ||||||  ||||| |||| || |||||||  | || |||    
T  4848930 aaaatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttcctatt 4848831  T
Q  140 attgatcatcaattctctatttatgcacaatcaaaacttccttgatttt 188  Q
    |||||||| || |||| || ||||||| |||| || |||||||||||||    
T  4848830 attgatcaccatttctatacttatgcataatccaagcttccttgatttt 4848782  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 45610699 - 45610619
Alignment:
Q  115 ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 195  Q
    ||||||| | ||||||||| ||||||||||| |||  | | |||||||||||||| |||| |||||||||| |||| ||||    
T  45610699 ttcatcaatattcttcataaccattattgataatctttcccctatttatgcacaaccaaaccttccttgatcttagaatca 45610619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 49272703 - 49272661
Alignment:
Q  44 aagatagaagaagactaagtccaaagacttaagccattactct 86  Q
    |||||||||||||||| |||||||| ||||||| |||||||||    
T  49272703 aagatagaagaagacttagtccaaaaacttaagtcattactct 49272661  T

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