View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_high_44 (Length: 207)
Name: NF6745_high_44
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 7297976 - 7297806
Alignment:
| Q |
20 |
gaaatcaaaactaaaatgagttcttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattaattcct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7297976 |
gaaatcaaaactaaaatgagttcttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattcattcct |
7297877 |
T |
|
| Q |
120 |
cttacagccttcagtggctatcaaaggtaaatattgttacctgattttttatattgtgtttcttgtatatt |
190 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7297876 |
ctcacagccttcagtggctatcaaaggtaaatattgttacctgattttttatattgtgtttcttgtatatt |
7297806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 7293502 - 7293331
Alignment:
| Q |
20 |
gaaatcaaaactaaaatgagttcttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattaattcct |
119 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||| | |||||| | | | || |
|
|
| T |
7293502 |
gaaatcaaaactgaaatgagcccttgctacttctttggtgttcctggttctttctatgatagagtttttcctgatcgaagtctgcatttcgtccactgct |
7293403 |
T |
|
| Q |
120 |
cttacagccttcagtggctatcaaaggtaaatattgttacctg-attttttatattgtgtttcttgtatatt |
190 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| ||| ||| | ||||||||||||||||||||||| |
|
|
| T |
7293402 |
cttacagtcttcactggctatcaaaggtttatattattatctgaaaaaattatattgtgtttcttgtatatt |
7293331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 32709716 - 32709628
Alignment:
| Q |
59 |
gttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattaattcctcttacagccttcagtggctatcaaaggt |
147 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| |||||| ||||| | ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
32709716 |
gttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagccttatgtggctatctaaggt |
32709628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 32704019 - 32703914
Alignment:
| Q |
42 |
cttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattaattcctcttacagccttcagtggctatc |
141 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||| | || ||||||||||| |||||| ||||| || |||||||||| |||||| ||| ||||| |
|
|
| T |
32704019 |
cttgctacttctttggggttcccggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttaagtttctatc |
32703920 |
T |
|
| Q |
142 |
aaaggt |
147 |
Q |
| |
|
||||| |
|
|
| T |
32703919 |
taaggt |
32703914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University