View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_high_8 (Length: 525)
Name: NF6745_high_8
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_high_8 |
 | |
|
| [»] scaffold0240 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 39045906 - 39045416
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39045906 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttccttagaaagttataaaacttattcaaacaacttgtagaatatttctctagactggaaaa |
39045807 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39045806 |
tctggcacatctaaaagagctcttattgctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttgaaatcaaa |
39045707 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39045706 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
39045607 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaat |
413 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
39045606 |
catggatgtg-ctgcacaagcttcatgagtagtaagaaaagtctttggtgcagcaaagaccatttcaattgttaatgacagtgtgtatcaacaagttaat |
39045508 |
T |
|
| Q |
414 |
ttctctattaagagaataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39045507 |
ttctctatcaagagaataatgcattaagagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
39045416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 7279498 - 7279993
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||||| ||||| |||| |
|
|
| T |
7279498 |
gtttggtgttcaaacttattggagtcaggtttttgtgcttcctcagaaggttctaaaacttattcaaacagcttgttgggtatttctctggactggaaaa |
7279597 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
|||||||| || ||||||||||||||| || ||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
7279598 |
tctggcacctccaaaagagctcttattgcttgggagcatacatgtctacctaagacagctggtggttggaatgttattgatttgaaagcttggaatcaag |
7279697 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||||||||||||||| || |||||| |||||||||||||||| || || ||||| ||| ||||||| |
|
|
| T |
7279698 |
ctgcaatttgtaaacttctttgaaacttggccaacaagaaggatgttcaatgggtgaaatgggttcatgaatattacaccaaggggagaaatgtgctact |
7279797 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaat |
413 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |||| | |||||||| |||| |
|
|
| T |
7279798 |
catggatgtgcctggacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagattatttcaagtgttaatgttagtgtttttcaacaagctaat |
7279897 |
T |
|
| Q |
414 |
ttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
||||||||||||||| ||||||| ||| | || |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7279898 |
ttctctattaagagaatgtataatgctataagcggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgt |
7279993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 481
Target Start/End: Complemental strand, 41100312 - 41099841
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||| ||||||| | ||||||| ||||| |||| |
|
|
| T |
41100312 |
gtttggtgttcaaacttattggagtcaggtttttgtacttcctcagaaggttctaaaacttattcaaacagcttgtagggtttttctctggactggaaaa |
41100213 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
|||| ||| || |||||||| |||||| || |||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41100212 |
tctgacacttccaaaagagcacttattgcttgggagcgtatgtgtcttcctaagacagctggtgggtggaatgtaattgatttgaaagtttggagtcaag |
41100113 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||||||||||||| |||||||| || ||| |||| |||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
41100112 |
ctgcaatttgtaaacttctttgaaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctact |
41100013 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | || | |||||||| |||| |
|
|
| T |
41100012 |
catggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtagttttcaacaagctaat |
41099913 |
T |
|
| Q |
414 |
ttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgt |
481 |
Q |
| |
|
|| |||||||||||| ||||||| |||| || || |||||||||||||||||| |||||||||||||| |
|
|
| T |
41099912 |
ttatctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgt |
41099841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 27180253 - 27180066
Alignment:
| Q |
126 |
aaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgta |
225 |
Q |
| |
|
|||||| ||||| || || | ||| |||| ||||| |||||||||| |||||| |||||||| |||||||||||| |||||| |||||||| || | |
|
|
| T |
27180253 |
aaaagatctcttgttgcttgagagaatatttgtttgcctaagacagttggtggatggaatgtcattgatttgaaatgttggaaccaagctgctatcatca |
27180154 |
T |
|
| Q |
226 |
agcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||| | | ||||||||| | ||||||||||||||||||| || ||| |||| |||||||| || | || ||||||||| ||||||| |
|
|
| T |
27180153 |
agcatttatggaacttggcaaacaagaaggatgttttatgggtaaaatgggtacatgaatactacataaaagggaggaatgtgctact |
27180066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 430
Target Start/End: Complemental strand, 41701579 - 41701461
Alignment:
| Q |
313 |
tcatggatgtgcctgcacaagcttcatgggtagcaagaaaagtcttt-ggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagtta |
411 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||| || ||||||||| |||||| ||||||| |||||||||||||||| |||| | ||||| || || |
|
|
| T |
41701579 |
tcatagatgtgccagcacaagcttcatgagtagaaaagaaagtcttttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagcta |
41701480 |
T |
|
| Q |
412 |
atttctctattaagagaat |
430 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
41701479 |
atttctctattaatagaat |
41701461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 13940907 - 13940998
Alignment:
| Q |
126 |
aaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaagctgc |
217 |
Q |
| |
|
|||||||||||| || | |||| |||| ||||| ||||||||||||||||| | |||||| |||||||||||| |||||| |||||||| |
|
|
| T |
13940907 |
aaaagagctcttgttgtttgggaatatatttgtttgcctaagacagctggtggatagaatgtcattgatttgaaatgttggaaccaagctgc |
13940998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 33632133 - 33631638
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||| | ||||||| ||||| |||| |
|
|
| T |
33632133 |
gtttggtgttcaaacttattggagtcaggtttttgtgcttcctcagaaggttctaaaacttattcaaacagcttgtagggtttttctctggactggaaaa |
33632034 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
|||||||| || |||||||| |||||| || |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632033 |
tctggcacttccaaaagagcacttattgcttgggagcgtatatgtcttcctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
33631934 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||||||||||||| |||||||| || ||| |||| |||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
33631933 |
ctgcaatttgtaaacttctttgaaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctact |
33631834 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | || | | |||||||| |||| |
|
|
| T |
33631833 |
catggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggctgtatttttcaacaagctaat |
33631734 |
T |
|
| Q |
414 |
ttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
||||||||||||||| ||||||| |||| || || |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33631733 |
ttctctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgt |
33631638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 18262055 - 18261556
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| | ||||||| ||||| |||| |
|
|
| T |
18262055 |
gtttggtgttcaaacttattggagtcaggtttttgtgcttcctcagaaggttctaaaacttattcaaacaacttgtagggtttttctctggactggaaaa |
18261956 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
|||||||| || |||||||| |||||| || |||||| ||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18261955 |
tctggcacttccaaaagagcacttattgcttgggagcgtatatgtcttcctaagacagttggtggatggaatgtaattgatttgaaagtttggaatcaag |
18261856 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaa----caagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgc |
309 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||| |||||||||||||| | |||||| |||||||||||||||| | ||| ||||||||| ||| |
|
|
| T |
18261855 |
ctgcaatttgtaaacttctttggaatttggccaataattaagaaggatgttttttgggtgaaatgggttcatgaatattacattaaggggaggaatgtgc |
18261756 |
T |
|
| Q |
310 |
tactcatggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagt |
409 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | || | | |||||||| |
|
|
| T |
18261755 |
tactcatggatgtgcctacacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagc |
18261656 |
T |
|
| Q |
410 |
taatttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| || || ||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18261655 |
taatttctctattaagagaatgtataatgctttaagaggtgactttacaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgt |
18261556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 277 - 504
Target Start/End: Complemental strand, 33623764 - 33623533
Alignment:
| Q |
277 |
ttcatgaatattatactaatgggaggaatatgctactcatggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccat |
376 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| || |
|
|
| T |
33623764 |
ttcatgaatattacactaaggggaggaatgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaaatctttggtgcagcaaagactat |
33623665 |
T |
|
| Q |
377 |
ttcaagtgttaatgacggtgtgtatcaacaagttaatttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaa |
472 |
Q |
| |
|
|||||||||| ||| | || | | |||||||| ||||||||||||||||||| ||||||| |||| || || |||||||||||||||||| ||||| |
|
|
| T |
33623664 |
ttcaagtgttgatggcagtatttttcaacaagctaatttctctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaa |
33623565 |
T |
|
| Q |
473 |
atgatatgtaataatcaagcccctccaaaatg |
504 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
33623564 |
atgatatgtaataatccagcccctccaaaatg |
33623533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 430
Target Start/End: Complemental strand, 7478797 - 7478382
Alignment:
| Q |
15 |
tttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaat |
114 |
Q |
| |
|
|||||||| ||| |||||||||| || || ||| |||||||| |||||| | |||||||||||||| |||||| | | || || | ||||| |||| |
|
|
| T |
7478797 |
tttggtgtgcaaacttattggagccaagtctttacccttcctaaaaaagttttgaaacttattcaaactgcttgtaaagtcttcctttggactggtaaat |
7478698 |
T |
|
| Q |
115 |
ctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaagc |
214 |
Q |
| |
|
|||| | || ||||||| ||||||| | ||||||| || ||||| || || |||||||||| |||||||| || |||||| | |||||| || || |
|
|
| T |
7478697 |
ctggtatttcaaaaagagttcttattgcctgggagcacatttgtttgccaaaatcagctggtggttggaatgtcatagatttgcattgttggaaccaggc |
7478598 |
T |
|
| Q |
215 |
tgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctactc |
314 |
Q |
| |
|
||| | |||||| |||||||| | |||| ||||| ||||| |||| ||||| |||||||||||||||| | || ||||| ||| |||| || |
|
|
| T |
7478597 |
tgccctaagtaagcagttttggaaccttgccaataagaaagatgtcttatgggtgaagtgggttcatgaatattacataaaagggagaaatgtgcttcta |
7478498 |
T |
|
| Q |
315 |
atggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaatt |
414 |
Q |
| |
|
||||| || || |||||||||||||||||| || |||||| |||| || ||||||||| |||| | ||| |||| | | ||| |||||||| ||| | |
|
|
| T |
7478497 |
atggaagtaccatcacaagcttcatgggtagtaaaaaaagtttttgctggagcaaagactttttccaatgtcaatggtgatatgtttcaacaagctaact |
7478398 |
T |
|
| Q |
415 |
tctctattaagagaat |
430 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
7478397 |
tcgctattaagcgaat |
7478382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 3938917 - 3938422
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||| | ||||||| ||||| |||| |
|
|
| T |
3938917 |
gtttggtgttcaaacttattggagtcaggtttttgtgcttcctcagaaggtgctaaaacttattcaaacagcttgtagggtttttctctggactggaaaa |
3938818 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
| |||||| || |||||||| |||||| || |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
3938817 |
tttggcacttccaaaagagcacttattgcttgggagcgtatatgtcttcctaagacagctggtgggtggaatgtaattgatttgaaagtttgaaaccaag |
3938718 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||| |||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
3938717 |
ctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctact |
3938618 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | || | | |||||||| |||| |
|
|
| T |
3938617 |
catggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaat |
3938518 |
T |
|
| Q |
414 |
ttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
||||||||||||||| ||||||| |||| || || |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3938517 |
ttctctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgt |
3938422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 504
Target Start/End: Original strand, 45066478 - 45066686
Alignment:
| Q |
300 |
aggaatatgctactcatggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgt |
399 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | | | |
|
|
| T |
45066478 |
aggaatgtgttactcatggatgtgcatgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggaaatattt |
45066577 |
T |
|
| Q |
400 |
atcaacaagttaatttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccc |
495 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||| || || |||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
45066578 |
ttcaacaagctaatttctctattaagagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccc |
45066677 |
T |
|
| Q |
496 |
tccaaaatg |
504 |
Q |
| |
|
||||||||| |
|
|
| T |
45066678 |
tccaaaatg |
45066686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 5673416 - 5673469
Alignment:
| Q |
164 |
taagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaagctgc |
217 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5673416 |
taagacaactggtgggtggaatgtcattgatttgaaatgttggaatcaagctgc |
5673469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 505
Target Start/End: Original strand, 17062 - 17557
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| | || ||| ||||||||||||||||| ||||||| ||||| ||| ||| | |||| |
|
|
| T |
17062 |
gtttggtgttcaaacttattggagtcaggtttttgtgcttcctcataaggttctaaaacttattcaaacagcttgtagggtatttgtctggaccggaaaa |
17161 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
|||||||| || ||||||| ||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17162 |
tctggcacttccaaaagagttcttattgcttgggagcgtatatgtctacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaaa |
17261 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||| |||||| ||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
17262 |
ctgcaatttgtaaacttctttggaatttggccaacaagaaggatgttttatgggtgaaatgggttcgtgaatattacactaaggggaggaatgtgctact |
17361 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaat |
413 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| || |||||||||||||||| ||||||| |||||||||||| ||| | || | | |||||||| |||| |
|
|
| T |
17362 |
catggatgtgtctgcacaagctccatgggtaataaaaaaagtctttggtgcaacaaagactatttcaagtgttgatggcagtatttttcaacaagctaat |
17461 |
T |
|
| Q |
414 |
ttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
||||||||||| ||| ||||||| |||| || || |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17462 |
ttctctattaaaagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgt |
17557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 30281151 - 30280779
Alignment:
| Q |
14 |
gtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||| | ||||||| ||||| |||| |
|
|
| T |
30281151 |
gtttggtgttcaaacttattggagtcaggtttttgtgcttcctcagaaggtgctaaaacttattcaaacagcttgtagggtttttctctggactggaaaa |
30281052 |
T |
|
| Q |
114 |
tctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaag |
213 |
Q |
| |
|
|||||||| || |||||||| |||||| || |||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30281051 |
tctggcacttccaaaagagcacttattgcttgggagcgtatatgtcttcctaagacagctggtgggtggaatgtaattgatttgaaagtttggaaccaag |
30280952 |
T |
|
| Q |
214 |
ctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctact |
313 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||| |||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
30280951 |
ctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactaaggggaggaatgtgctact |
30280852 |
T |
|
| Q |
314 |
catggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgtt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30280851 |
catggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgtt |
30280779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 104 - 505
Target Start/End: Complemental strand, 3423868 - 3423467
Alignment:
| Q |
104 |
gactgaaaaatctggcacatctaaaagagctcttattcctagggagcatatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtt |
203 |
Q |
| |
|
||||| |||||||||||| || |||||||| |||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3423868 |
gactggaaaatctggcacttccaaaagagcacttattgcttgggagcatatatgtcttcctaagacagctggtgggtggaatgtaattgatttgaaagtt |
3423769 |
T |
|
| Q |
204 |
tggaatcaagctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaaggggttcatgaatattatactaatgggagga |
303 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||| |||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
3423768 |
tggaatcaagctgcaatttgtaaacttctttggaatttggccaataagaaggatgttttatgggtgaaatgggttcatgaatattacactatggggagga |
3423669 |
T |
|
| Q |
304 |
atatgctactcatggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatca |
403 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | || | | ||| |
|
|
| T |
3423668 |
atgtgctactcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttca |
3423569 |
T |
|
| Q |
404 |
acaagttaatttctctattaagaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctcca |
499 |
Q |
| |
|
||||| |||||||||||||| |||| ||||| | |||| || || |||||||||||||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
3423568 |
acaagctaatttctctattaggagaatgtataatactttaagaggtgactttgcaaaggttggttggaggaaaatga----taataatccagcccctcca |
3423473 |
T |
|
| Q |
500 |
aaatgt |
505 |
Q |
| |
|
|||||| |
|
|
| T |
3423472 |
aaatgt |
3423467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 325 - 505
Target Start/End: Original strand, 22163626 - 22163810
Alignment:
| Q |
325 |
ctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaagaccatttcaagtgttaatgacggtgtgtatcaacaagttaatttctctattaa |
424 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||| | || | | |||||||| ||||||||||||||| |
|
|
| T |
22163626 |
ctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaatttctctattaa |
22163725 |
T |
|
| Q |
425 |
gaga----ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
|||| ||||||| |||| || || |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22163726 |
gagaatgtataatgctttaagaggtgactttgcaaaggttggttggaggaaaatgatatgtaataatccagcccctccaaaatgt |
22163810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 51 - 370
Target Start/End: Original strand, 1160869 - 1161188
Alignment:
| Q |
51 |
cttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaatctggcacatctaaaagagctcttattcctagggagc |
150 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| |||||||| | || || | ||||| |||||||| | || ||||||||||||||| | |||||| |
|
|
| T |
1160869 |
cttcctaaaaaagttttgaaacttattcaaactgcttgtagagtcttcctttggactggtaaatctggtatttcaaaaagagctcttattgcctgggagc |
1160968 |
T |
|
| Q |
151 |
atatatgtttacctaagacagctggtgggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaagcttctttggaacttgaccaacaa |
250 |
Q |
| |
|
| || ||||| || || ||| |||||| |||||||| || |||||| | |||||| || ||||| | |||||| |||||||| | |||| || |
|
|
| T |
1160969 |
acatttgtttgccaaaatcaggtggtggttggaatgtcatagatttgcattgttggaaccaggctgccctaagtaagcagttttggaaccttgccaataa |
1161068 |
T |
|
| Q |
251 |
gaaggatgttttataagtgaaaggggttcatgaatattatactaatgggaggaatatgctactcatggatgtgcctgcacaagcttcatgggtagcaaga |
350 |
Q |
| |
|
||| ||||| |||| ||||| |||||||||||||||| | || ||||| ||| |||| || ||||| || || |||||||||||||||||| || | |
|
|
| T |
1161069 |
gaaagatgtcttatgggtgaagtgggttcatgaatattacataaaagggagaaatgtgcttctaatggaagtaccatcacaagcttcatgggtagtaaaa |
1161168 |
T |
|
| Q |
351 |
aaagtctttggtgcagcaaa |
370 |
Q |
| |
|
||||| |||| || |||||| |
|
|
| T |
1161169 |
aaagtttttgctggagcaaa |
1161188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 35164591 - 35164515
Alignment:
| Q |
429 |
ataatgcattaaaagtagagtttgcaaaggttggttgggggaaaatgatatgtaataatcaagcccctccaaaatgt |
505 |
Q |
| |
|
|||||||||||| || || |||||| |||||||||||| |||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
35164591 |
ataatgcattaagaggagggtttgctaaggttggttggaggaaaatgatatgtaataattcagcctctccgaaatgt |
35164515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 35164773 - 35164710
Alignment:
| Q |
307 |
tgctactcatggatgtgcctgcacaagcttcatgggtagcaagaaaagtctttggtgcagcaaa |
370 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
35164773 |
tgctacttatggatgtgcctgcagaagcctcatgggtaataaaaaaagtctttggtgcagcaaa |
35164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 23122758 - 23122883
Alignment:
| Q |
15 |
tttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattcaaacaacttgtagaatatttctctagactgaaaaat |
114 |
Q |
| |
|
|||||||| ||| |||||||||| || || |||| |||||||| |||||| | |||||||||||||| |||||||| | || || | |||||| |||| |
|
|
| T |
23122758 |
tttggtgtgcaaacttattggagccaagtctttgcccttcctaaaaaagttttgaaacttattcaaacggcttgtagagtcttcctttggactgataaat |
23122857 |
T |
|
| Q |
115 |
ctggcacatctaaaagagctcttatt |
140 |
Q |
| |
|
|||| | || |||||| |||||||| |
|
|
| T |
23122858 |
ctggtatttcaaaaagaactcttatt |
23122883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 49821096 - 49821233
Alignment:
| Q |
173 |
tggtgggtggaatgtaattgatttgaaagtttggaatcaagctgcaatttgtaagcttctttggaacttgaccaacaagaaggatgttttataagtgaaa |
272 |
Q |
| |
|
||||||||| ||| | ||||||||||||||||| ||||||| || ||||| ||| | |||||| || || |||| || || |||||||||| ||||||| |
|
|
| T |
49821096 |
tggtgggtgaaatattattgatttgaaagtttgaaatcaagttgtaatttttaaacaactttggtacctggccaataaaaaagatgttttatgagtgaaa |
49821195 |
T |
|
| Q |
273 |
ggggttcatgaatattatactaatgggaggaatatgct |
310 |
Q |
| |
|
|||||||||| ||| | | ||| ||||||||| |||| |
|
|
| T |
49821196 |
tgggttcatgagtatcacaataaggggaggaatgtgct |
49821233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University