View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_11 (Length: 517)
Name: NF6745_low_11
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 243 - 510
Target Start/End: Complemental strand, 32937088 - 32936821
Alignment:
| Q |
243 |
ggtaatagtgtagtatatacatcaaatgaatgaatatgatgcataccaaccatctaggtgattctggaatgaagtacaacccgggtattaacattgcaca |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32937088 |
ggtaatagtgtagtatatacatcaaatgaatgaatatgatgcataccaaccatctaggtgattctggaatgaagtacaacccgggtattaatattgcaca |
32936989 |
T |
|
| Q |
343 |
tggtaaaattcctgcaaaacaaaacagagaaatgattcatcgataaatccattttagtttcctttttcattagctcaaaaagagtgttgaaaaattgcat |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32936988 |
tggtaaaattcctgcaaaacaaaacagagaaatgattcatcgataaatccgttttagtttcctttttcattagctgaaaaagagtgttgaaaaattgcat |
32936889 |
T |
|
| Q |
443 |
attccagtttctattaaagaatatgataatagaaaatggtaatgtattgtaattttgcattagatatt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32936888 |
attccagtttctattaaagaatatgataatagaaaatggtaatgtattgtaattttgcattagatatt |
32936821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 32937312 - 32937122
Alignment:
| Q |
19 |
ataacatttctcattaaaaaggtccaatgaagtaaggttagcccaattttggcactatatatagtaataatatgagattaattaagcacctgtatttctt |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32937312 |
ataacatttctcattaaaaagctccaatgaagtaaagttagcccaattttggcactatatatagtaataataggagattaattaagcacctgtatttctt |
32937213 |
T |
|
| Q |
119 |
gtgcttcaatattaatatcaaccttgggtcctcgtaaagattgtagtgaagattcaaatttatccatcattcccatttcggcctatacatt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32937212 |
gtgcttcaatattaatatcaaccttgggtcctcgtaaagattgtagtgaagattcaaatttatccatcattcccatttcggcctatacatt |
32937122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 32929330 - 32929253
Alignment:
| Q |
279 |
tgatgcataccaaccatctaggtgattctggaatgaagtacaacccgggtattaacattgcacatggtaaaattcctg |
356 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||| |||| ||||||||||| | || ||| || |||||||||| |
|
|
| T |
32929330 |
tgatccataccaaccatctaggagattctggtatgaaaaacaatccgggtattaatactgtacaaggcaaaattcctg |
32929253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 7753836 - 7753908
Alignment:
| Q |
284 |
cataccaaccatctaggtgattctggaatgaagtacaacccgggtattaacattgcacatggtaaaattcctg |
356 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| | || || |||||||| |||| ||||||||||||||||| |
|
|
| T |
7753836 |
cataccaaccatcttggtgattctggtatgaaaaataatccaggtattaatattgtacatggtaaaattcctg |
7753908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University