View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_12 (Length: 503)
Name: NF6745_low_12
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 125 - 484
Target Start/End: Original strand, 21950281 - 21950641
Alignment:
| Q |
125 |
ctaccaacaacaacaattacaaaccctctctttttcatcttcacaccccacgtcgttgctttcgcctctcccctcaatctactacttctcccgatttcaa |
224 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21950281 |
ctaccaacaacagcaattacaaaccctctctttttcatcttcacaccccacgtcgttgctttcgcctctcccctcaatctactacttctcccgatttcaa |
21950380 |
T |
|
| Q |
225 |
cggctgggcccacctcgatacacccgcccgctccaccaccgctcacaaaccattttcttcctttgctccttttactgctgctactgcttccgtcgctctc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21950381 |
cggctgggcccacctcgatacacccgcccgctccaccaccgctcacaaaccattttcttcctttgctccttttgctgctgctactgcttccgtcgctctc |
21950480 |
T |
|
| Q |
325 |
cttcttgccgccttctccctttctagtagaaataataatggtgagtagtcagtcatttctgtttcattttatnnnnnnnnnnnnnnnnnnncgctgctgt |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
21950481 |
cttcttgccgccttctccctttctagtagaaataataatggtgagtagtcagtactttctgtttcattttatttgttgttgttgtcgttgctgctgttgt |
21950580 |
T |
|
| Q |
425 |
tgtcgtcgtcgtc-acactcactcaaattcatgtgcgtttaggtttcaatattcaattcac |
484 |
Q |
| |
|
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21950581 |
tgttgtcgtcatcaacactcactcaaattcatgtgcgtttaggtttcaatattcaattcac |
21950641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 21950157 - 21950246
Alignment:
| Q |
1 |
gcagagtgaatatacattcgttctctcaaccctaattctaacagaacaataacaataatgtggccttgtagtgttgttactacacctaac |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21950157 |
gcagagtgaatatacattcgttctctcaaccctaattctaacagaacaataacaataatgtggccttgtagtgttgttactacacctaac |
21950246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University