View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_low_15 (Length: 472)

Name: NF6745_low_15
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_low_15
NF6745_low_15
[»] chr4 (6 HSPs)
chr4 (258-455)||(47807393-47807591)
chr4 (118-259)||(47806634-47806775)
chr4 (1-91)||(47806517-47806607)
chr4 (8-88)||(28910933-28911014)
chr4 (8-72)||(7982770-7982835)
chr4 (3-62)||(2357703-2357763)
[»] chr8 (2 HSPs)
chr8 (365-455)||(16938566-16938657)
chr8 (8-91)||(16939085-16939169)
[»] chr1 (6 HSPs)
chr1 (335-414)||(35323157-35323235)
chr1 (8-87)||(18527052-18527132)
chr1 (2-64)||(14939005-14939068)
chr1 (2-64)||(14944249-14944312)
chr1 (2-87)||(14949022-14949108)
chr1 (17-64)||(42105669-42105717)
[»] chr6 (1 HSPs)
chr6 (3-91)||(4175831-4175920)
[»] chr7 (1 HSPs)
chr7 (8-87)||(3868183-3868263)
[»] chr5 (2 HSPs)
chr5 (2-76)||(2414369-2414444)
chr5 (8-76)||(2413216-2413285)
[»] chr2 (1 HSPs)
chr2 (8-87)||(35413583-35413663)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 258 - 455
Target Start/End: Original strand, 47807393 - 47807591
Alignment:
Q  258 tatctttttagatcgtttctttcttcatgattcaatatttatcttttgaannnnnnnnnnnnnnn-aaatagctcgatttaaaaaatgtaatttgattag 356  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||                ||||||||||||||||||||||||||||||||||    
T  47807393 tatctttttagatcatatctttcttcatgattaaatatttatcttttgaaattttttttattttttaaatagctcgatttaaaaaatgtaatttgattag 47807492  T
Q  357 tctatggttgttgggatgatcttttggtactaaattaataatagaaacaaaaggggtttattatttgtgtttgttgatgaatgtttttatgattttgtt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47807493 tctatggttgttgggatgatcttttggtactaaattaataatagaaacaaaaggggtttattatttgtgtttgttgatgaatgtttttatgattttgtt 47807591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 47806634 - 47806775
Alignment:
Q  118 ctttcttaataactttcttctaaccatgttttttagtttaaggttgttgttttcttcaaacccattttcctttcatcttgacgattatcctcatttttct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47806634 ctttcttaataactttcttctaaccatgttttttagtttaaggttgttattttcttcaaacccattttcctttcatcttgacgattatcctcatttttct 47806733  T
Q  218 tcatctcttcttcttataactccctctaaatcctgtagctta 259  Q
    ||||||||||||| | ||||||||||||||| ||||| ||||    
T  47806734 tcatctcttcttcctttaactccctctaaattctgtaactta 47806775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 47806517 - 47806607
Alignment:
Q  1 caagagtttaattagaatagaccgacagcgtaaaacaatttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaatgtt 91  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47806517 caagagtttaattagaatagactgacagcgtaaaacaatttacaccgtcaaccaattaaaatcactcaattaaacatatcaacttaatgtt 47806607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 28911014 - 28910933
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaac-aatttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaat 88  Q
    ||||||||||||||| ||||| ||||||| |||||||||| |||||| ||||||||||  |||||||||| |||| ||||||    
T  28911014 ttaattagaatagactgacagtgtaaaacaaatttacactatcaaccgattaaaatcatccaattaaacacatcatcttaat 28910933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 7982835 - 7982770
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaatta 72  Q
    ||||||||||||||| ||||  ||||||||| |||||| | |||| ||||||||||||| ||||||    
T  7982835 ttaattagaatagactgacaatgtaaaacaactttacattatcaatcaattaaaatcacccaatta 7982770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 2357703 - 2357763
Alignment:
Q  3 agagtttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaat 62  Q
    |||| |||||||||||||||  |||| ||||||||| |||| ||| |||||||||||||||    
T  2357703 agagattaattagaatagactaacagtgtaaaacaactttagactatcaaccaattaaaat 2357763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 16938566 - 16938657
Alignment:
Q  365 tgttgggatgatcttttggtactaaattaataatagaaacaaaaggggtttattatttgtgtttgttgatgaatgttttt-atgattttgtt 455  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  16938566 tgttgggatgatcttttgatactaaattaataatagaaacaaaaggagttaattatttgtgtttgttgatgaatgtttttgatgattttgtt 16938657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 16939169 - 16939085
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaacaattt-acactgtcaaccaattaaaatcactcaattaaacatatcaacttaatgtt 91  Q
    |||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||  ||||||||    
T  16939169 ttaattagaatagatcgatagtgtaaaacaattttacactgtcaaccaattaaaatcactaaattagacacatcagtttaatgtt 16939085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 35323157 - 35323235
Alignment:
Q  335 ttaaaaaatgtaatttgattagtctatggttgttgggatgatcttttggtactaaattaataatagaaacaaaaggggtt 414  Q
    |||||||||| |||| | ||||||||||||  ||||||||||||||||||||||||||||| | |||||||||| |||||    
T  35323157 ttaaaaaatgaaatt-gtttagtctatggtcattgggatgatcttttggtactaaattaatgacagaaacaaaaagggtt 35323235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 18527052 - 18527132
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaa 87  Q
    |||||||||||||||  |||| |  |||||| |||||||| ||||||||||||||||| ||||||| ||| |||| |||||    
T  18527052 ttaattagaatagactaacagtgcgaaacaactttacactatcaaccaattaaaatcattcaattagacacatcatcttaa 18527132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 14939005 - 14939068
Alignment:
Q  2 aagagtttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatca 64  Q
    ||||| |||||||||||||| |||||  ||||||||| |||||||| ||||| |||||||||||    
T  14939005 aagagattaattagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatca 14939068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 14944249 - 14944312
Alignment:
Q  2 aagagtttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatca 64  Q
    ||||| |||||||||||||| |||||  ||||||||| |||||||| ||||| |||||||||||    
T  14944249 aagagattaattagaatagatcgacaatgtaaaacaattttacactatcaactaattaaaatca 14944312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 14949022 - 14949108
Alignment:
Q  2 aagagtttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaa 87  Q
    ||||| ||||||| ||||||||||||  ||||||||| |||||| | ||||| |||||||||||  |||||| ||| |||| |||||    
T  14949022 aagagattaattaaaatagaccgacaaagtaaaacaattttacattatcaactaattaaaatcatacaattagacacatcatcttaa 14949108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 42105669 - 42105717
Alignment:
Q  17 atagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatca 64  Q
    |||||| ||||  ||||||||| ||||||||||||||||||||||||||    
T  42105669 atagactgacaatgtaaaacaagtttacactgtcaaccaattaaaatca 42105717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 4175920 - 4175831
Alignment:
Q  3 agagtttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaatgtt 91  Q
    |||| |||||| |||||||| ||||| ||||||||| |||||||||||| |||||||||| |||| |||| |||| |||| |||||||||    
T  4175920 agagattaatttgaatagactgacagtgtaaaacaactttacactgtcagccaattaaaaccacttaattcaacacatcagcttaatgtt 4175831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 3868183 - 3868263
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaa 87  Q
    ||||||||||||||| ||||| ||||||||| ||| |||| ||||||||||||||||||  ||||||||| |||| |||||    
T  3868183 ttaattagaatagactgacagtgtaaaacaattttgcactatcaaccaattaaaatcaccaaattaaacacatcatcttaa 3868263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 2414444 - 2414369
Alignment:
Q  2 aagagtttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaattaaaca 76  Q
    ||||| ||||||| ||||||| ||||| |||||| || |||||| ||||||||||||||||||| |||||||||||    
T  2414444 aagagattaattataatagactgacagtgtaaaataagtttacattgtcaaccaattaaaatcattcaattaaaca 2414369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 2413216 - 2413285
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaa-caatttacactgtcaaccaattaaaatcactcaattaaaca 76  Q
    ||||||||||||||| ||||| ||||||  |||||||| |||| | ||||||||||||  ||||||||||    
T  2413216 ttaattagaatagactgacagtgtaaaataaatttacattgtcgatcaattaaaatcatccaattaaaca 2413285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 35413583 - 35413663
Alignment:
Q  8 ttaattagaatagaccgacagcgtaaaacaa-tttacactgtcaaccaattaaaatcactcaattaaacatatcaacttaa 87  Q
    |||||||||||||||  |||| ||||||||| |||||||| ||||||||||||| |||  |||||||||| |||| |||||    
T  35413583 ttaattagaatagactaacagtgtaaaacaactttacactatcaaccaattaaattcatccaattaaacacatcatcttaa 35413663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University