View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_16 (Length: 442)
Name: NF6745_low_16
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 5 - 437
Target Start/End: Complemental strand, 43277127 - 43276689
Alignment:
| Q |
5 |
ctcaccaactttttcaatgatcttgaccggttacttgttatttaccttttaacactttattannnnnnnnaattattgagtttcaaactgtcacccacta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43277127 |
ctcaccaactttttcaatgatcttgaccggttacttgttatttaccttttaacactttatttatttttttaattattgagtttcaaactgtcacccacta |
43277028 |
T |
|
| Q |
105 |
tcggtgagaacagaacagtcatcctgcatagatttattccttcttgaatgccctct------catatggacatgtgaggttgtatgattctaattgtttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43277027 |
tcggtgagaacagaacagtcatcctacatagatttattccttcttgaatgccctctgtttctcatatggacatgtgaggttgtatgattctaattgtttt |
43276928 |
T |
|
| Q |
199 |
cgaaatttttcattctagaaatcattaacaatgttaaactaccattccttttnnnnnnntgaaataaactatcatgctgtctttaaaaactaaactgtat |
298 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||| ||| |
|
|
| T |
43276927 |
cgaaaattttcattctagaaatcattaacaatgttaaactaccattcctttaaaaacaatgaaataaactatcatggtgtctctaaaaacgaaactttat |
43276828 |
T |
|
| Q |
299 |
ttatgccaaaaccaccaccactacattgaatttttaacttttctcctcttctctaacaacacatcatagtgactaaaacaactttgttttctcatccaca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43276827 |
ttatgccaaaaccaccaccactacattgaatttttaacttttctcctcttctctaacaacacatcatagtgactaaaacaactttgttttctgatccaca |
43276728 |
T |
|
| Q |
399 |
aggatcttgagaattggtgaagcatttaggaaattgtat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43276727 |
aggatcttgagaattggtgaagcatttaggaaattgtat |
43276689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 5 - 437
Target Start/End: Complemental strand, 7920201 - 7919762
Alignment:
| Q |
5 |
ctcaccaactttttcaatgatcttgaccggttacttgttatttaccttttaacactttattannnnnnnnaattattgagtttcaaactgtcacccacta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7920201 |
ctcaccaactttttcaatgatcttgaccggttacttgttatttaccttttaacactttatttatttttttaattattgagtttcaaactgtcacccacta |
7920102 |
T |
|
| Q |
105 |
tcggtgagaacagaacagtcatcctgcatagatttattccttcttgaatgccctct------catatggacatgtgaggttgtatgattctaattgtttt |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7920101 |
tcggtgagaacagaacaatcatcctgcatagatttattctttcttgaatgccctctgtttctcatatggacatgtgaggttgtatgattctaattgtttt |
7920002 |
T |
|
| Q |
199 |
cgaaatttttcattctagaaatcattaacaatgttaaactaccattccttttnnnnnnn-tgaaataaactatcatgctgtctttaaaaactaaactgta |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
7920001 |
cgaaatttttcattctagaaatcattaacaatgttaaactaccatttcttttaaaaaaaatgaaataaactatcatggtgtctctaaaaacgaaactgta |
7919902 |
T |
|
| Q |
298 |
tttatgccaaaaccaccaccactacattgaatttttaacttttctcctcttctctaacaacacatcatagtgactaaaacaactttgttttctcatccac |
397 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7919901 |
tttatgccaaaaccaccaccactgcattgaatttttaacttttctcctcttctctaacaacacatcatagtgactaaaacaactttgttttctgatccac |
7919802 |
T |
|
| Q |
398 |
aaggatcttgagaattggtgaagcatttaggaaattgtat |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7919801 |
aaggatcttgagaattggtgaagcatttaggaaattgtat |
7919762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 294 - 431
Target Start/End: Complemental strand, 17958998 - 17958860
Alignment:
| Q |
294 |
tgtatttatgccaaaaccaccaccactacattgaatttttaa-cttttctcctcttctctaacaacacatcatagtgactaaaacaactttgttttctca |
392 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||| |||| ||||||||| ||||||||||| |||| ||||| ||||| | |||||||||| |
|
|
| T |
17958998 |
tgtatttatggcaaaaccaccaccgctgtattgaatttttttgctttgctcctcttcgctaacaacacaccataatgactgaaacagcattgttttctcc |
17958899 |
T |
|
| Q |
393 |
tccacaaggatcttgagaattggtgaagcatttaggaaa |
431 |
Q |
| |
|
||||||| || |||||||||||||| | ||||||||||| |
|
|
| T |
17958898 |
tccacaatgaacttgagaattggtggatcatttaggaaa |
17958860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17959263 - 17959200
Alignment:
| Q |
1 |
ccatctcaccaactttttcaatgatctt-gaccggttacttgttatttaccttttaacacttta |
63 |
Q |
| |
|
|||| |||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
17959263 |
ccatgtcaccaactttttcaaatctctttgactggttacttgttattaaccttttaacacttta |
17959200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University