View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_17 (Length: 428)
Name: NF6745_low_17
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 29053281 - 29053691
Alignment:
| Q |
1 |
ccctgaatataagatcttattgagtaaatcatggagattaagaaaatttataatagtattgaatttgctaacaagtgccaattggtaatgtttttctaag |
100 |
Q |
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| T |
29053281 |
ccctgaatataagatcttattgagtaaatcgtggagattaagaaaatttataatagtattgaatttgctaacaagtgccaattggtaatgtttttctaag |
29053380 |
T |
|
| Q |
101 |
ttgtttacttgttggttgcagtagagacaaagtaattaggtgtattatggtaaagaaataattaatcaagttgaaaatttgaaggaggacttataaagaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
29053381 |
ttgtttacttgttggttgcaatagagacaaagtaattaggtgtattatggtaaagaaataattaatcaagttgaaaatttgaaggaggatttataaaaaa |
29053480 |
T |
|
| Q |
201 |
ggacaagaaataatcaattgtgttcttatgctaaagttttcaaatggggtcaaacaataataatacaaaggctaatttttaatttacactttgaaaatgt |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053481 |
ggacaagaaataataaattgtgttcttatgctaaagttttcaaatggggttaaacaataataatacaaaggctaatttttaatttacactttgaaaatgt |
29053580 |
T |
|
| Q |
301 |
gcaatttggtttttgtgtcattggaatctaggaatatagtttgaaactgtagaacgtttcatccaatgtgagactcttaacacacacccctcagactcaa |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
29053581 |
gcaatttggtttttgtgatattggaatctaggaatatagtttgaaactgtagaacgtttcatccaatgtgagacttttaacacacacccctcacactcaa |
29053680 |
T |
|
| Q |
401 |
gaccttatagc |
411 |
Q |
| |
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||||||||||| |
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| T |
29053681 |
gaccttatagc |
29053691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 12971600 - 12971646
Alignment:
| Q |
151 |
taaagaaataattaatcaagttgaaaatttgaaggaggacttataaa |
197 |
Q |
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| T |
12971600 |
taaagaaataattaattgagttgaaaatttgaagggggtcttataaa |
12971646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 10311196 - 10311142
Alignment:
| Q |
129 |
aaagtaattaggtgtattatggtaaagaaataattaatcaagttgaaaatttgaa |
183 |
Q |
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|||||||||||||||||| ||||||||||| ||||||| | || |||||||||| |
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| T |
10311196 |
aaagtaattaggtgtattttggtaaagaaagaattaatgcatttaaaaatttgaa |
10311142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 44767808 - 44767755
Alignment:
| Q |
129 |
aaagtaattaggtgtattatggtaaagaaataattaatcaagttgaaaatttga |
182 |
Q |
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|||||||||||| ||||||| ||| ||| ||||||||| |||||||||||||| |
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| T |
44767808 |
aaagtaattaggggtattatagtagagagataattaatgcagttgaaaatttga |
44767755 |
T |
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