View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_low_19 (Length: 413)

Name: NF6745_low_19
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_low_19
NF6745_low_19
[»] chr1 (3 HSPs)
chr1 (189-406)||(30807617-30807836)
chr1 (33-127)||(21075940-21076035)
chr1 (31-127)||(23405474-23405571)
[»] chr4 (4 HSPs)
chr4 (188-308)||(41417109-41417229)
chr4 (72-126)||(27387716-27387770)
chr4 (81-126)||(10129632-10129679)
chr4 (83-127)||(55322333-55322377)
[»] chr6 (8 HSPs)
chr6 (213-306)||(1708072-1708165)
chr6 (31-127)||(7422701-7422798)
chr6 (28-127)||(13886592-13886692)
chr6 (28-126)||(4834770-4834869)
chr6 (31-127)||(7415693-7415790)
chr6 (258-308)||(12476711-12476761)
chr6 (31-128)||(33242902-33243000)
chr6 (31-126)||(7426640-7426736)
[»] chr3 (4 HSPs)
chr3 (29-115)||(14029379-14029466)
chr3 (31-126)||(36326544-36326640)
chr3 (79-127)||(18319503-18319551)
chr3 (72-112)||(32414849-32414889)
[»] chr7 (5 HSPs)
chr7 (258-306)||(24801312-24801360)
chr7 (27-127)||(30452747-30452848)
chr7 (31-127)||(42513061-42513158)
chr7 (27-126)||(30456356-30456456)
chr7 (31-115)||(11206525-11206610)
[»] chr5 (2 HSPs)
chr5 (31-126)||(41709554-41709650)
chr5 (31-126)||(8123582-8123678)
[»] chr8 (2 HSPs)
chr8 (68-127)||(44762059-44762118)
chr8 (33-126)||(44765330-44765424)
[»] chr2 (1 HSPs)
chr2 (31-127)||(31211867-31211964)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 189 - 406
Target Start/End: Complemental strand, 30807836 - 30807617
Alignment:
Q  189 aactcattctcatcttggattctctagagctttaccacgaagttagttgtttagtcacacaaa--gtggaactttcaaaataatctaatacatggagaga 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||| ||||||||||    
T  30807836 aactcattctcatcttggattctctagagctttaccacgaagttagttgtttagtcacacacacggtggaactttcaaaataatctaattcatggagaga 30807737  T
Q  287 gatctaagaggtgctaaaatcctttcataaataattatcattccactaccatcaaaattcgtgttccaaacattttataactttatatttgcctactccc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  30807736 gatctaagaggtgctaaaatcctttcataaataattatcattccactaccatcaaaagtcgtgttccaaacattttacaactttatatttgcctactccc 30807637  T
Q  387 ttataatcaacattgatttt 406  Q
    | |||||||||||| |||||    
T  30807636 taataatcaacattcatttt 30807617  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 21076035 - 21075940
Alignment:
Q  33 aatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||| |||||||||   ||||||||| || || ||| ||||||||||| |||||||||  ||||| ||||||||||||||| |||||||||||    
T  21076035 aatcaatgaaaaatatagtgaatttcctttcttttatctgtagtttctctcgctaaattctggagtgtcatccctactcgaatttgatcgtatcat 21075940  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 23405571 - 23405474
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  ||||||||||||||| ||||| | |||||||||    
T  23405571 agaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatcat 23405474  T

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Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 188 - 308
Target Start/End: Complemental strand, 41417229 - 41417109
Alignment:
Q  188 caactcattctcatcttggattctctagagctttaccacgaagttagttgtttagtcacacaaagtggaactttcaaaataatctaatacatggagagag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  41417229 caactcattctcatcttggattctctagagctttaccacgaagttagttgtttagtcacacacagtggaacttttaaaataatctaattcatggagagag 41417130  T
Q  288 atctaagaggtgctaaaatcc 308  Q
    |||||||||||||||||||||    
T  41417129 atctaagaggtgctaaaatcc 41417109  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 27387716 - 27387770
Alignment:
Q  72 tagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||||| |||||||||||  ||||||||||||||||||||| | ||||||||    
T  27387716 tagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 10129679 - 10129632
Alignment:
Q  81 tctctaaattctaa--agtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||||||||||  ||||||||||||||||||||| | ||||||||    
T  10129679 tctctaaattctaaggagtgtgatccctactcgaattgggtcgtatca 10129632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 55322377 - 55322333
Alignment:
Q  83 tctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||||  ||||||||||||||||||||| | |||||||||    
T  55322377 tctaaattctggagtgtgatccctactcgaattgggtcgtatcat 55322333  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 1708165 - 1708072
Alignment:
Q  213 tagagctttaccacgaagttagttgtttagtcacacaaagtggaactttcaaaataatctaatacatggagagagatctaagaggtgctaaaat 306  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  1708165 tagaactttaccacgaagttagttgtttagtcacacacagtggaactttcaaattaatctaattcatggagagagatctaagaggtgctaaaat 1708072  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 7422701 - 7422798
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| |||||||||||||||| ||||  ||||||||||||||||||||| | |||||||||    
T  7422701 agaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatcat 7422798  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 13886592 - 13886692
Alignment:
Q  28 attagaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    |||||||||||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  |||||||||||||||| |||| | ||||||||    
T  13886592 attagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatca 13886691  T
Q  127 t 127  Q
    |    
T  13886692 t 13886692  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 4834770 - 4834869
Alignment:
Q  28 attagaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    |||||||||||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  |||||||||||||||| |||| | ||||||||    
T  4834770 attagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatca 4834869  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 7415693 - 7415790
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| |||||||||||||||| ||||  |||||||||||||||| | || |||||||||||    
T  7415693 agaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctctaatttctggagtgtgatccctactcaagttggatcgtatcat 7415790  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 12476711 - 12476761
Alignment:
Q  258 ctttcaaaataatctaatacatggagagagatctaagaggtgctaaaatcc 308  Q
    |||||||| ||||||||| ||||||| ||||||||| ||||||||||||||    
T  12476711 ctttcaaattaatctaattcatggagtgagatctaaaaggtgctaaaatcc 12476761  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 33242902 - 33243000
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcatc 128  Q
    ||||||||| ||||||||||  |||||| || || || | | |||||||||||||||| ||||  ||||||||| ||||||||||| | ||||||||||    
T  33242902 agaatcaatgaaaaatataatgaatttcttttcttttatttctagtttctctctctaatttctggagtgtgatctctactcgaattgggtcgtatcatc 33243000  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 7426640 - 7426736
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| || ||||||| ||||| ||||  ||||||||||||||||||||| | ||||||||    
T  7426640 agaatcaatgaaaaatataatgaattttctttctcttttctctaatttctctttctaatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 14029379 - 14029466
Alignment:
Q  29 ttagaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaatt 115  Q
    ||||||||||| ||||||||||  ||||||||| || || ||| ||||||||| |||||||||||  |||||||||||||||||||||    
T  14029379 ttagaatcaatgaaaaatataatgaatttcctttcttttatctctagtttctcactctaaattctggagtgtgatccctactcgaatt 14029466  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 36326544 - 36326640
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  ||||||||||||||||||||| | ||||||||    
T  36326544 agaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 18319503 - 18319551
Alignment:
Q  79 tctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||| ||||| ||||||||||||||||||||  | |||||||||    
T  18319503 tctctctaatttctagagtgtgatccctactcgaatcgggtcgtatcat 18319551  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 32414849 - 32414889
Alignment:
Q  72 tagtttctctctctaaattctaaagtgtgatccctactcga 112  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  32414849 tagtttctctctctaaattttggagtgtgatccctactcga 32414889  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 24801360 - 24801312
Alignment:
Q  258 ctttcaaaataatctaatacatggagagagatctaagaggtgctaaaat 306  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  24801360 ctttcaaattaatctaattcatggagagagatctaagaggtgctaaaat 24801312  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 30452747 - 30452848
Alignment:
Q  27 gattagaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatc 125  Q
    ||||||||  ||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  ||||||||||||||||||||| | |||||||    
T  30452747 gattagaacgaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 30452846  T
Q  126 at 127  Q
    ||    
T  30452847 at 30452848  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 42513158 - 42513061
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||| ||||  ||||||||||||||||||||| | |||||||||    
T  42513158 agaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaatttctggagtgtgatccctactcgaattgggtcgtatcat 42513061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 30456356 - 30456456
Alignment:
Q  27 gattagaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatc 125  Q
    ||||||||  ||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  ||||||||||||||||||||| | |||||||    
T  30456356 gattagaacgaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatc 30456455  T
Q  126 a 126  Q
    |    
T  30456456 a 30456456  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 11206525 - 11206610
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaatt 115  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| ||||||||| |||||||||||  ||||||||| |||||||||||    
T  11206525 agaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctctaaattctggagtgtgatctctactcgaatt 11206610  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 41709554 - 41709650
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||||| ||||||||||  ||||| ||| || || ||||||||||||| |||||||||||  ||||||||| ||||||||||| | ||||||||    
T  41709554 agaatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctctaaattctggagtgtgatctctactcgaattgggtcgtatca 41709650  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 8123582 - 8123678
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||||| ||||||||||  ||||| ||| || || ||| || |||||| |||||| |||| ||||||||||| |||||||||| | ||||||||    
T  8123582 agaatcaatgaaaaatataatgaattttctttctcttttctttaatttctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatca 8123678  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 44762059 - 44762118
Alignment:
Q  68 tctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||| | |||||||||    
T  44762059 tctatagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatcat 44762118  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 44765330 - 44765424
Alignment:
Q  33 aatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaattctaaagtgtgatccctactcgaattcgatcgtatca 126  Q
    ||||||| ||||||||||  ||||| ||| || || ||||||||||||| |||||||||||  ||||| ||||||||||||||| | ||||||||    
T  44765330 aatcaatgaaaaatataatgaattttctttctcttttctatagtttctccctctaaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 31211867 - 31211964
Alignment:
Q  31 agaatcaataaaaaatataaccaatttcctt-ctattgtctatagtttctctctctaaatt-ctaaagtgtgatccctactcgaattcgatcgtatcat 127  Q
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T  31211867 agaatcaatgaaaaatataatgaattttctttcttttatctctagttt-tctctcttaatttctggagtgtgatccctactcgaattggatcgtatcat 31211964  T

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