View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_low_2 (Length: 723)

Name: NF6745_low_2
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_low_2
NF6745_low_2
[»] chr2 (38 HSPs)
chr2 (1-632)||(4707409-4708040)
chr2 (502-614)||(26998323-26998435)
chr2 (521-621)||(41528255-41528355)
chr2 (502-621)||(3201325-3201444)
chr2 (515-614)||(32273677-32273776)
chr2 (515-614)||(38071002-38071100)
chr2 (502-613)||(40584440-40584551)
chr2 (518-621)||(6110257-6110362)
chr2 (515-614)||(4891694-4891793)
chr2 (502-573)||(19264147-19264218)
chr2 (502-621)||(28599190-28599309)
chr2 (502-621)||(33198673-33198792)
chr2 (502-621)||(35517122-35517241)
chr2 (518-607)||(9709526-9709615)
chr2 (503-613)||(6765976-6766087)
chr2 (518-573)||(11617071-11617126)
chr2 (515-614)||(32010108-32010207)
chr2 (502-553)||(43415468-43415519)
chr2 (518-621)||(45085256-45085359)
chr2 (517-614)||(8032725-8032823)
chr2 (503-573)||(8701649-8701719)
chr2 (515-553)||(16494981-16495019)
chr2 (502-560)||(24204571-24204629)
chr2 (502-560)||(25572105-25572163)
chr2 (518-560)||(45660425-45660467)
chr2 (502-559)||(7645269-7645326)
chr2 (515-560)||(35115859-35115904)
chr2 (502-554)||(29524083-29524135)
chr2 (517-553)||(33677550-33677586)
chr2 (53-100)||(4745567-4745613)
chr2 (455-554)||(9864711-9864813)
chr2 (515-562)||(12938300-12938347)
chr2 (502-557)||(43451564-43451619)
chr2 (358-396)||(4703205-4703243)
chr2 (515-561)||(11030985-11031031)
chr2 (518-560)||(14874023-14874065)
chr2 (515-561)||(16179642-16179688)
chr2 (514-587)||(28678702-28678774)
[»] chr8 (29 HSPs)
chr8 (518-621)||(26483529-26483632)
chr8 (502-614)||(17713227-17713339)
chr8 (502-621)||(34890218-34890337)
chr8 (515-573)||(8745628-8745686)
chr8 (502-560)||(2628208-2628266)
chr8 (455-621)||(7022398-7022566)
chr8 (515-614)||(4038938-4039037)
chr8 (515-614)||(17336746-17336845)
chr8 (518-621)||(36190769-36190872)
chr8 (515-614)||(41362364-41362463)
chr8 (521-614)||(25195109-25195202)
chr8 (515-556)||(26954449-26954490)
chr8 (518-621)||(7858525-7858628)
chr8 (515-614)||(8673385-8673484)
chr8 (510-565)||(34899978-34900033)
chr8 (518-621)||(35456084-35456187)
chr8 (518-560)||(13144006-13144048)
chr8 (514-559)||(8712583-8712628)
chr8 (518-614)||(8711881-8711977)
chr8 (514-562)||(29920324-29920372)
chr8 (502-573)||(28497182-28497253)
chr8 (518-613)||(31734120-31734215)
chr8 (518-553)||(34158351-34158386)
chr8 (518-560)||(2052892-2052934)
chr8 (519-561)||(14576213-14576255)
chr8 (515-553)||(33563568-33563606)
chr8 (518-552)||(43216407-43216441)
chr8 (502-559)||(5217451-5217508)
chr8 (518-621)||(15957971-15958076)
[»] chr3 (41 HSPs)
chr3 (502-621)||(37042419-37042538)
chr3 (518-621)||(30189573-30189677)
chr3 (518-621)||(23311611-23311714)
chr3 (502-614)||(8097020-8097132)
chr3 (515-614)||(34194892-34194991)
chr3 (502-560)||(46918215-46918273)
chr3 (502-559)||(16032989-16033046)
chr3 (502-621)||(20847270-20847389)
chr3 (517-561)||(54725627-54725671)
chr3 (515-614)||(10114915-10115014)
chr3 (515-614)||(10252015-10252114)
chr3 (515-614)||(22479069-22479168)
chr3 (502-573)||(37075011-37075082)
chr3 (518-620)||(579156-579258)
chr3 (515-573)||(10014314-10014372)
chr3 (517-615)||(34722622-34722720)
chr3 (502-562)||(26724993-26725053)
chr3 (502-614)||(30454727-30454838)
chr3 (522-621)||(14752230-14752329)
chr3 (515-614)||(22456023-22456122)
chr3 (502-621)||(28875409-28875528)
chr3 (518-621)||(35963155-35963258)
chr3 (518-621)||(47864194-47864297)
chr3 (515-614)||(48291826-48291925)
chr3 (518-621)||(11054330-11054429)
chr3 (515-559)||(7886632-7886676)
chr3 (515-555)||(21214304-21214344)
chr3 (503-559)||(31292670-31292726)
chr3 (505-573)||(36546593-36546661)
chr3 (505-573)||(36561654-36561722)
chr3 (505-560)||(2927353-2927408)
chr3 (508-559)||(3084188-3084239)
chr3 (518-553)||(50651055-50651090)
chr3 (514-552)||(3972347-3972385)
chr3 (514-552)||(3997493-3997531)
chr3 (522-560)||(6438147-6438185)
chr3 (518-560)||(23910531-23910573)
chr3 (502-560)||(32619832-32619890)
chr3 (505-562)||(36150980-36151038)
chr3 (518-560)||(46711676-46711718)
chr3 (518-559)||(9264616-9264657)
[»] chr6 (14 HSPs)
chr6 (502-621)||(35129097-35129217)
chr6 (518-621)||(3095778-3095881)
chr6 (502-621)||(11082288-11082407)
chr6 (515-614)||(16524384-16524482)
chr6 (517-561)||(5300658-5300702)
chr6 (515-614)||(4031991-4032090)
chr6 (515-614)||(4987947-4988046)
chr6 (515-610)||(16013488-16013583)
chr6 (502-621)||(21542417-21542536)
chr6 (502-565)||(21964008-21964071)
chr6 (522-621)||(34177704-34177803)
chr6 (514-560)||(30794247-30794293)
chr6 (505-573)||(7274921-7274989)
chr6 (515-614)||(3888431-3888530)
[»] chr7 (28 HSPs)
chr7 (502-621)||(25737669-25737788)
chr7 (518-621)||(14805869-14805972)
chr7 (518-621)||(15252863-15252966)
chr7 (502-621)||(35923251-35923370)
chr7 (502-621)||(45485954-45486073)
chr7 (518-621)||(46760315-46760418)
chr7 (502-615)||(4910675-4910788)
chr7 (455-613)||(19912762-19912922)
chr7 (511-573)||(8015723-8015786)
chr7 (502-621)||(25944575-25944694)
chr7 (502-614)||(39170540-39170652)
chr7 (502-554)||(47779670-47779722)
chr7 (502-557)||(10248591-10248646)
chr7 (518-621)||(18102529-18102632)
chr7 (518-621)||(20123738-20123841)
chr7 (515-614)||(31769017-31769116)
chr7 (518-560)||(6191105-6191147)
chr7 (504-553)||(31549947-31549996)
chr7 (516-560)||(24151638-24151682)
chr7 (502-573)||(22632136-22632207)
chr7 (515-614)||(38260322-38260421)
chr7 (522-573)||(47557663-47557714)
chr7 (518-560)||(4069063-4069105)
chr7 (518-560)||(12632402-12632444)
chr7 (515-573)||(35888024-35888082)
chr7 (583-616)||(18800856-18800889)
chr7 (508-557)||(36576476-36576525)
chr7 (508-557)||(48879446-48879495)
[»] chr4 (42 HSPs)
chr4 (502-621)||(47867876-47867995)
chr4 (455-621)||(4058712-4058880)
chr4 (502-621)||(20281588-20281707)
chr4 (515-621)||(17794590-17794696)
chr4 (502-615)||(56318106-56318219)
chr4 (502-602)||(7654633-7654733)
chr4 (521-621)||(29203503-29203603)
chr4 (502-621)||(2229244-2229363)
chr4 (502-621)||(14332757-14332876)
chr4 (518-621)||(20716177-20716280)
chr4 (520-614)||(23978169-23978263)
chr4 (518-559)||(16604898-16604939)
chr4 (502-559)||(28669037-28669094)
chr4 (502-559)||(40553828-40553885)
chr4 (515-556)||(46070571-46070612)
chr4 (502-554)||(5483314-5483366)
chr4 (502-614)||(5841815-5841927)
chr4 (515-555)||(49080320-49080360)
chr4 (515-614)||(8178288-8178387)
chr4 (514-609)||(17799182-17799277)
chr4 (518-621)||(26916322-26916425)
chr4 (502-573)||(28142658-28142729)
chr4 (502-553)||(29511490-29511541)
chr4 (502-573)||(35310778-35310849)
chr4 (518-615)||(41414663-41414759)
chr4 (515-556)||(47516240-47516281)
chr4 (502-614)||(8013125-8013237)
chr4 (522-614)||(28318473-28318565)
chr4 (502-554)||(48793664-48793716)
chr4 (514-562)||(50145792-50145840)
chr4 (503-559)||(55580729-55580785)
chr4 (515-614)||(5064704-5064803)
chr4 (515-562)||(21722731-21722778)
chr4 (505-560)||(24940423-24940478)
chr4 (515-558)||(32203273-32203316)
chr4 (502-553)||(32323298-32323349)
chr4 (502-573)||(37911929-37912000)
chr4 (502-557)||(50768501-50768556)
chr4 (502-561)||(53848517-53848576)
chr4 (518-560)||(10069755-10069797)
chr4 (515-553)||(32410393-32410431)
chr4 (502-559)||(39078216-39078272)
[»] chr1 (41 HSPs)
chr1 (502-614)||(5950445-5950557)
chr1 (502-613)||(2126045-2126156)
chr1 (502-559)||(43765355-43765412)
chr1 (515-614)||(7397712-7397811)
chr1 (502-561)||(8889740-8889799)
chr1 (515-614)||(15912204-15912303)
chr1 (518-621)||(39555645-39555748)
chr1 (508-613)||(52841494-52841599)
chr1 (502-614)||(37538815-37538927)
chr1 (503-562)||(3861739-3861798)
chr1 (502-621)||(6785455-6785574)
chr1 (518-621)||(15959699-15959802)
chr1 (518-621)||(32624064-32624167)
chr1 (518-621)||(40718677-40718780)
chr1 (515-614)||(44510275-44510374)
chr1 (521-615)||(28120817-28120911)
chr1 (515-556)||(16688200-16688241)
chr1 (515-560)||(32318616-32318661)
chr1 (502-614)||(5858414-5858526)
chr1 (502-562)||(10558799-10558859)
chr1 (518-614)||(13351686-13351782)
chr1 (502-573)||(11241074-11241145)
chr1 (518-621)||(12449026-12449129)
chr1 (502-621)||(24190469-24190587)
chr1 (502-573)||(24728670-24728741)
chr1 (515-614)||(25185360-25185459)
chr1 (515-614)||(45840122-45840220)
chr1 (518-621)||(47600098-47600201)
chr1 (515-573)||(30701441-30701499)
chr1 (455-573)||(6786885-6787005)
chr1 (520-573)||(28016807-28016860)
chr1 (502-562)||(7468006-7468066)
chr1 (518-621)||(35691391-35691495)
chr1 (502-554)||(44148879-44148931)
chr1 (502-562)||(52984991-52985051)
chr1 (521-560)||(42965877-42965916)
chr1 (518-621)||(47014550-47014652)
chr1 (502-560)||(30221785-30221843)
chr1 (515-573)||(50176569-50176627)
chr1 (502-559)||(2246057-2246114)
chr1 (515-560)||(35366259-35366304)
[»] chr5 (27 HSPs)
chr5 (518-621)||(6686383-6686486)
chr5 (518-621)||(11261943-11262046)
chr5 (502-621)||(43590005-43590124)
chr5 (516-614)||(10153985-10154083)
chr5 (515-614)||(12912350-12912449)
chr5 (502-621)||(38130159-38130278)
chr5 (518-621)||(38280846-38280949)
chr5 (515-614)||(8959646-8959745)
chr5 (502-613)||(20644021-20644132)
chr5 (518-614)||(37522648-37522744)
chr5 (502-621)||(42273648-42273765)
chr5 (518-621)||(37562821-37562924)
chr5 (515-556)||(5369087-5369128)
chr5 (523-614)||(5659584-5659676)
chr5 (515-614)||(3463871-3463970)
chr5 (518-572)||(34425378-34425432)
chr5 (502-554)||(19413207-19413259)
chr5 (515-555)||(29307243-29307283)
chr5 (502-554)||(39505276-39505328)
chr5 (502-573)||(1144534-1144605)
chr5 (515-614)||(5736296-5736395)
chr5 (502-553)||(5984151-5984202)
chr5 (515-554)||(8506497-8506536)
chr5 (502-553)||(25840931-25840982)
chr5 (515-568)||(16153402-16153454)
chr5 (505-562)||(17351446-17351503)
chr5 (520-553)||(32017770-32017803)
[»] scaffold0442 (1 HSPs)
scaffold0442 (502-621)||(10044-10163)
[»] scaffold0774 (1 HSPs)
scaffold0774 (502-621)||(3471-3590)
[»] scaffold0300 (1 HSPs)
scaffold0300 (518-621)||(632-735)
[»] scaffold0045 (1 HSPs)
scaffold0045 (518-621)||(77956-78059)
[»] scaffold0565 (1 HSPs)
scaffold0565 (515-614)||(5931-6030)
[»] scaffold0111 (1 HSPs)
scaffold0111 (502-573)||(40226-40297)
[»] scaffold1157 (1 HSPs)
scaffold1157 (502-559)||(1710-1767)
[»] scaffold0018 (1 HSPs)
scaffold0018 (518-621)||(154860-154963)
[»] scaffold0330 (1 HSPs)
scaffold0330 (515-573)||(3215-3273)
[»] scaffold0010 (1 HSPs)
scaffold0010 (502-559)||(160962-161019)


Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 4708040 - 4707409
Alignment:
Q  1 tatttattccctcccatcaaaatacagtgtcagatactagtgcaactatcataagttcttttatttatgtgaaaaatattccagttgacgataaacacat 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4708040 tatttattccctcccatcaaaatacagtgtcagatactggtgcaactatcagaagttcttttatttatgtgaaaaatattccagttgacgataaacacat 4707941  T
Q  101 t--aaaatgttgttgcaagtataataataaaataatctatatttactcattttac--ttgaattctttcatgttttttgttattatctaatcaaagtgta 196  Q
       | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  4707940 gtcagaatgttgttgcaagtataataataaaataatctatatttactcattttacatttgaattctttcatgttttttgttattatctaatccaagtgta 4707841  T
Q  197 atagttttttcaccttctactgttatatcatgaactctactaaaaaagtattccctataaagtatttgttccaactccaagaatctctctactttatccc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  4707840 atagttttttcaccttctactgttatatcatgaactctactaaaaaagtattccctgtaaagtatttgttccaactccaagaatctctctactttatcct 4707741  T
Q  297 tgtctcaaagaaattcaccattggaaaatggtttcccaagtcccaactgatgcttaacccaaaaggttaccccaattttgaacatacaaacattagttgt 396  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4707740 tgtctcaaagaaattcaccattgaaaaatggtttcccaagtcccaactgatgcttaacccaaaaggttaccccaattttgaacatacaaacattagttgt 4707641  T
Q  397 acgaacgctaatactccctccgtttcaaattataggaagnnnnnnnnnnnnntcaatccacatttattaagaacactaaaacatgatttggagtatagnn 496  Q
     |||| |||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||      
T  4707640 tcgaatgctaatactccctccgtttcaaattataggaag---aaaaaaaaaatcaatccacatttattaagaacactaaaacatgatttggagtatag-t 4707545  T
Q  497 nnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatg 596  Q
         |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4707544 tttttgtgttttccttagaataagtttaacgggaagatgttaaaacaattttcattggttattcatcatagaaaaaaggagaggaggagcacattgaatg 4707445  T
Q  597 caatttacatttaattttacgagaagtcataacagc 632  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4707444 caatttacatttaattttacgagaattcataacagc 4707409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 614
Target Start/End: Complemental strand, 26998435 - 26998323
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| || ||| |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||    
T  26998435 gtgttatctttaaaataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactt 26998336  T
Q  602 tacatttaatttt 614  Q
    | |||||||||||    
T  26998335 tgcatttaatttt 26998323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 521 - 621
Target Start/End: Complemental strand, 41528355 - 41528255
Alignment:
Q  521 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgaga 620  Q
    |||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| ||||    
T  41528355 ttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatgaga 41528256  T
Q  621 a 621  Q
    |    
T  41528255 a 41528255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 3201444 - 3201325
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||  | |||||||| ||||    
T  3201444 gtgttttctttggaaaaagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagataaaattgaatgtaatt 3201345  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  3201344 tgcatttaattttatgagaa 3201325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 32273776 - 32273677
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| |||||||||||||||    
T  32273776 aataagttttataggaagatataaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttacatttaatttt 32273677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 38071100 - 38071002
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||| |||||||||| ||||||||||||||||||  ||||| ||||| |||| || |  | ||||| |||||||||| |||||||||||||||    
T  38071100 aataagttttacaggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaata-gagcaaattgaatgcactttacatttaatttt 38071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 613
Target Start/End: Original strand, 40584440 - 40584551
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||| | || | ||||| || ||   ||| | |||||||| ||||    
T  40584440 gtgttttctttagaataagttttatgggaagatgtaaaaacaattttcattggttgttggttatgggaaaaatgaaagagagagaaaattgaatgtaatt 40584539  T
Q  602 tacatttaattt 613  Q
    | ||||||||||    
T  40584540 tgcatttaattt 40584551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 6110257 - 6110362
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gag-gagcacattgaatgcaatttacatttaatttta 615  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || ||| ||| | |||||||| ||||| ||||||||||||    
T  6110257 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagagaaaattgaatgtaatttgcatttaatttta 6110356  T
Q  616 cgagaa 621  Q
     |||||    
T  6110357 tgagaa 6110362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 4891694 - 4891793
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||| ||||||  ||||| ||| | |||| || |    ||||| |||||||||| |||||||||||||||    
T  4891694 aataagttttataggaagatgtaaaaacaatttttattggtagttgattataaagaaaatgaaaaagagagcagattgaatgcactttacatttaatttt 4891793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 19264218 - 19264147
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||    
T  19264218 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaa 19264147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 28599190 - 28599309
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||| ||||||||||||||| |||| |||||||||||| ||||| | || ||||||| || || | ||| | |||||||| |||     
T  28599190 gtgttttctttggaaaaagatttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaata 28599289  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  28599290 tgcatttaattttatgagaa 28599309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 33198673 - 33198792
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| ||| || ||||||||||||||||||| ||||||||||| ||||||||||| | || || |||| || ||   ||| | |||||||| ||||    
T  33198673 gtgttttctttaaaagaagttttataggaagatgtaaaaacaattttgattggttattggttatggagaaaatgaaagagagagaaaattgaatgtaatt 33198772  T
Q  602 tacatttaattttacgagaa 621  Q
    | ||||||||| || |||||    
T  33198773 tgcatttaattctatgagaa 33198792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 35517241 - 35517122
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||||  |||||| |||| |||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  35517241 gtgttttctttggaaaaagttttatagtgagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 35517142  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  35517141 tgcatttaattttatgagaa 35517122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 607
Target Start/End: Complemental strand, 9709615 - 9709526
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatt 607  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| || || |||| || ||   || || |||||||||||||| ||||    
T  9709615 aagttttataggaagatgtgaaaacaattttcatttgttattgattattgagaaaatgaaagagagaacaaattgaatgcaatttgcatt 9709526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 503 - 613
Target Start/End: Original strand, 6765976 - 6766087
Alignment:
Q  503 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatt 601  Q
    ||||||| || |||||| |||||||||||||||| ||||||||||| ||||  ||||| | || |||||||   || ||| ||| | |||||||| ||||    
T  6765976 tgttttcattggaataaattttataggaagatgtaaaaacaatttttattgactattggttatggaaaaaaatggaagagagagaaaattgaatgtaatt 6766075  T
Q  602 tacatttaattt 613  Q
    ||||||||||||    
T  6766076 tacatttaattt 6766087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 573
Target Start/End: Complemental strand, 11617126 - 11617071
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | |||| |||||    
T  11617126 aagttttataggaagatgtaaaaacaattttcattggctattggttatagtaaaaa 11617071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 32010207 - 32010108
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||| ||||| |||| || |    ||||| ||| |||||| ||| |||||||||||    
T  32010207 aataagttttataggaagatgtaaaaataattttcattggtagttgattatagagaaaatgaaaaagagagcaaattaaatgcactttgcatttaatttt 32010108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 553
Target Start/End: Complemental strand, 43415519 - 43415468
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||| ||| || ||||||||||||||||||| ||||||||||||||||    
T  43415519 gtgttttctttaaaaaaagttttataggaagatgtaaaaacaattttcattg 43415468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 45085359 - 45085256
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||| |  |||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  45085359 aagttttataggaagatgtaaaaacaattttcattagccattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatg 45085260  T
Q  618 agaa 621  Q
    ||||    
T  45085259 agaa 45085256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 8032725 - 8032823
Alignment:
Q  517 taagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||| ||||||||||| |||||||  |  | || || |||| || ||||| ||||| |||||||||| ||| |||||||||||    
T  8032725 taagttttataggaagatgtaaaaacaatttttattggttgctagttattgagaaaatgaaaggagagagcaaattgaatgcattttgcatttaatttt 8032823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 573
Target Start/End: Complemental strand, 8701719 - 8701649
Alignment:
Q  503 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||||| || |||||||||| || ||||||||| ||||||||||||||||| ||||| | || |||||||    
T  8701719 tgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattggctattggttatggaaaaaa 8701649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 16494981 - 16495019
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16494981 aataagttttataggaagatgtaaaaacaattttcattg 16495019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 24204571 - 24204629
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||| || |||||||||||||||||| |||| ||| ||||||||||||| |||||    
T  24204571 gtgttttctttggaataagttttataggaatatgtaaaatcaattttcattggctattg 24204629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 25572163 - 25572105
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||| || |||||||||| || ||||||||| ||||||||||||||||| |||||    
T  25572163 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattggatattg 25572105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 45660467 - 45660425
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  45660467 aagttttataggaagatgtaaaaacaattttcattggctattg 45660425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 7645269 - 7645326
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||||||||||||||| ||| || |||| |||| ||||||||||||||||| ||||    
T  7645269 gtgttttccttagaataaatttcatgggaacatgtaaaaacaattttcattggctatt 7645326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 35115859 - 35115904
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||    
T  35115859 aataagttttatagaaagatgtaaaaacaattttcatttgttattg 35115904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 29524083 - 29524135
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||    
T  29524083 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattgg 29524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 553
Target Start/End: Complemental strand, 33677586 - 33677550
Alignment:
Q  517 taagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||||||||||||||| ||||||||||||||||    
T  33677586 taagttttataggaagatgtaaaaacaattttcattg 33677550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 4745613 - 4745567
Alignment:
Q  53 aagttcttttatttatgtgaaaaatattccagttgacgataaacacat 100  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||    
T  4745613 aagttctcttatttatgtgaaaaata-tctagttgacgataaacacat 4745567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 554
Target Start/End: Original strand, 9864711 - 9864813
Alignment:
Q  455 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 551  Q
    |||| |||||||||| |||||||||| |   ||||||||||||       |||||||| || |||||||||| || |||||| || ||||||||||||||    
T  9864711 cacacttattaagaaaactaaaacataagaatttggagtatagtttttttgtgttttctttggaataagtttcatgggaagaggtaaaaacaattttcat 9864810  T
Q  552 tgg 554  Q
    |||    
T  9864811 tgg 9864813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 12938347 - 12938300
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||||||||||||  ||| ||||||||||||||||| |||||||    
T  12938347 aataagttttataggaaagtgtaaaaacaattttcattggctattgat 12938300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 43451619 - 43451564
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggtta 557  Q
    ||||| |||||||||||||||| || | ||||||| |||| |||||||||||||||    
T  43451619 gtgttctccttagaataagtttcatggaaagatgtaaaaataattttcattggtta 43451564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 4703243 - 4703205
Alignment:
Q  358 aaaggttaccccaattttgaacatacaaacattagttgt 396  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  4703243 aaaggttaccccaattttgaacgtacaaacattggttgt 4703205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 11030985 - 11031031
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattga 561  Q
    |||||||||||||| ||||| | ||||||||||| ||||||||||||    
T  11030985 aataagttttatagaaagatataaaaacaatttttattggttattga 11031031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 14874065 - 14874023
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||| |||| |||||||||||| |||||    
T  14874065 aagttttataggaagatgtaaaaataattttcattggctattg 14874023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 16179642 - 16179688
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattga 561  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  16179642 aataagttttatagaaagatgtaaaaacaaattttattggttattga 16179688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 28678702 - 28678774
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagca 587  Q
    |||||||| |||||| || |||| |||||| |||| ||||||||||||| ||||| |||| || ||||||||||    
T  28678702 gaataagtgttatagaaaaatgtaaaaacattttt-attggttattgattatagagaaaatgaaaggaggagca 28678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 26483632 - 26483529
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||| || ||||||| || || | ||| | |||||||| ||||||||||||||||||||    
T  26483632 aagttttatagggagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaagaaagagaaaattgaatgtaatttacatttaattttacg 26483533  T
Q  618 agaa 621  Q
    ||||    
T  26483532 agaa 26483529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 502 - 614
Target Start/End: Complemental strand, 17713339 - 17713227
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaat 600  Q
    ||||| |||||  |||||||||||||||||||| | ||||||||||||||||||||||| | || ||||||| | || ||| |||||||||||||||| |    
T  17713339 gtgttatccttgaaataagttttataggaagatttaaaaacaattttcattggttattggttattgaaaaaatg-gaagagagagcacattgaatgcact 17713241  T
Q  601 ttacatttaatttt 614  Q
    || |||||||||||    
T  17713240 ttgcatttaatttt 17713227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 34890218 - 34890337
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  34890218 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 34890317  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  34890318 tgcatttaattttatgagaa 34890337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 8745686 - 8745628
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  8745686 aataagttttataggaagatgtaaaaacaattttcattggttgttgattatagaaaaaa 8745628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 2628208 - 2628266
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||    
T  2628208 gtgttatccttaaaataagttttataggaagatgtaaaaataattttcattggttattg 2628266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 621
Target Start/End: Original strand, 7022398 - 7022566
Alignment:
Q  455 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 551  Q
    ||||||||||||||| |||||||||| |   ||||||||||||       |||||||| ||  || ||||||||||||||||| | |||| |||||||||    
T  7022398 cacatttattaagaaaactaaaacataaaaatttggagtatagtttttt-gtgttttctttgaaaaaagttttataggaagatataaaaataattttcat 7022496  T
Q  552 tggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 621  Q
    ||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |||||    
T  7022497 tggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatgagaa 7022566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 4038938 - 4039037
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||| |||||||| ||||||||||||||| ||  ||||| ||||| |||| || |    ||||| |||||||||| |||||||||||||||    
T  4038938 aataagttttatatgaagatgtaaaaacaattttcatttgtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttacatttaatttt 4039037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 17336845 - 17336746
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||| |||||||||||||||| ||||||||||||||||||  ||||| |||||  ||| || | |  ||||| |||||||||| ||| |||||||||||    
T  17336845 aataaattttataggaagatgtaaaaacaattttcattggtagttgattatagagtaaatgaaaaggagagcaaattgaatgcactttgcatttaatttt 17336746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 36190872 - 36190769
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||| |    
T  36190872 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaataaaagagagagaaaattgaatgtaatttgcatttaattttatg 36190773  T
Q  618 agaa 621  Q
    ||||    
T  36190772 agaa 36190769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 41362364 - 41362463
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| ||| |||||| ||| |||||||||||    
T  41362364 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagtgagcaaattaaatgcactttgcatttaatttt 41362463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 521 - 614
Target Start/End: Original strand, 25195109 - 25195202
Alignment:
Q  521 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  25195109 ttttataggaagatgtaaaaacaattttcattggtggttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 25195202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 26954449 - 26954490
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggtt 556  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  26954449 aataagttttataggaagatgtaaaaacaattttcattggtt 26954490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 7858628 - 7858525
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||   |||||| || ||||||| || ||   ||| | |||||| | ||||| |||||||||||| |    
T  7858628 aagttttataggaagatgtaaaaacaattttcattgaccattgattatggaaaaaatgaaagagagagaaaattgaaagtaatttgcatttaattttatg 7858529  T
Q  618 agaa 621  Q
    ||||    
T  7858528 agaa 7858525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 8673484 - 8673385
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||| |||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||| | ||| |||||||||||    
T  8673484 aataagttttataagaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgtactttgcatttaatttt 8673385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 565
Target Start/End: Complemental strand, 34900033 - 34899978
Alignment:
Q  510 cttagaataagttttataggaagatgttaaaacaattttcattggttattgatcat 565  Q
    ||||||||||||||||||||| ||| | |||| |||||| ||||||||||||||||    
T  34900033 cttagaataagttttataggaggatttaaaaataattttgattggttattgatcat 34899978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 35456084 - 35456187
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||| ||||||| ||||||||||||||||| |||| || || |||||||  | ||   ||| | | |||||| |||||||||||||||||| |    
T  35456084 aagttttatagaaagatgtaaaaacaattttcattggctattaattatggaaaaaataaaagagagagaaaaatgaatgtaatttacatttaattttatg 35456183  T
Q  618 agaa 621  Q
    ||||    
T  35456184 agaa 35456187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 560
Target Start/End: Original strand, 13144006 - 13144048
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  13144006 aagttttataggaagatgtaaaaacaattttcattagttattg 13144048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 8712628 - 8712583
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  8712628 gaataagttttatagaaagatgtaaaaacaatttttattggttatt 8712583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 614
Target Start/End: Complemental strand, 8711977 - 8711881
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||||||| |||| |||||||||||| ||||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||    
T  8711977 aagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaattaaagagagagaaaattgaatgtaatttgcatttaatttt 8711881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 29920324 - 29920372
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||||| || ||||||||| ||||||||||||||||| |||||||    
T  29920324 gaataagtttcatgggaagatgtaaaaacaattttcattggctattgat 29920372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 28497182 - 28497253
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| |||||  |||||||||||| ||||||||| |||||||||||||||  |||||| | || |||||||    
T  28497182 gtgttatccttgaaataagttttatgggaagatgtaaaaacaattttcattacttattggttattgaaaaaa 28497253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 613
Target Start/End: Complemental strand, 31734215 - 31734120
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattt 613  Q
    ||||||||||||||||| | ||||||||||||||||| |||||   || ||||||| || ||   ||| | |||||||| ||||| ||||||||||    
T  31734215 aagttttataggaagatataaaaacaattttcattggctattggatatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattt 31734120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 553
Target Start/End: Original strand, 34158351 - 34158386
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattg 553  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34158351 aagttttataggaagatgtaaaaacaattttcattg 34158386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 2052934 - 2052892
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||    
T  2052934 aagttttatgggaagatgtaaaaacaattttcattggctattg 2052892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 14576213 - 14576255
Alignment:
Q  519 agttttataggaagatgttaaaacaattttcattggttattga 561  Q
    |||||||||| ||||||| |||| |||||||||||||||||||    
T  14576213 agttttatagaaagatgtaaaaataattttcattggttattga 14576255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 33563568 - 33563606
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  33563568 aataagttttatgggaagatgtaaaaacaattttcattg 33563606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 552
Target Start/End: Original strand, 43216407 - 43216441
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcatt 552  Q
    ||||||||||||||||||| |||||||||||||||    
T  43216407 aagttttataggaagatgtaaaaacaattttcatt 43216441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 5217508 - 5217451
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||| |||||  ||||||||| |||| ||||||| ||||||||||| ||||||||||    
T  5217508 gtgttatccttgaaataagtttcatagaaagatgtaaaaacaatttttattggttatt 5217451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 15957971 - 15958076
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gag-gagcacattgaatgcaatttacatttaatttta 615  Q
    |||||||||||||| | || ||||||||||||||| | ||||| | || ||||||| || || ||| ||| | |||||||| ||||| ||||||||||||    
T  15957971 aagttttataggaataagtaaaaacaattttcatttgctattggttatggaaaaaatgaaagagagagagaaaattgaatgtaatttgcatttaatttta 15958070  T
Q  616 cgagaa 621  Q
     |||||    
T  15958071 tgagaa 15958076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 37042419 - 37042538
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| || || | ||| | |||||||| ||||    
T  37042419 gtgttttcgttggaaaaagttttataggaagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaagaaagagaaaattgaatgtaatt 37042518  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  37042519 tgcatttaattttatgagaa 37042538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 30189677 - 30189573
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaag-gagaggaggagcacattgaatgcaatttacatttaattttac 616  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||  || || | ||| | |||||||| |||||||||||||||||||    
T  30189677 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaaatgaaagaaagagaatattgaatgtaatttacatttaattttac 30189578  T
Q  617 gagaa 621  Q
    |||||    
T  30189577 gagaa 30189573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 23311611 - 23311714
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||| |||||||||||||| |    
T  23311611 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatatacatttaattttatg 23311710  T
Q  618 agaa 621  Q
    ||||    
T  23311711 agaa 23311714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 8097020 - 8097132
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  |||||||||||||||||||||| |||| |||||||||||||||||| | || || |||| || ||   ||||| |||||||||| ||    
T  8097020 gtgttatccttgaaataagttttataggaagatgtaaaaataattttcattggttattgcttattgagaaaatgaaagagagagcaaattgaatgcactt 8097119  T
Q  602 tacatttaatttt 614  Q
    | |||||||||||    
T  8097120 tgcatttaatttt 8097132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 34194991 - 34194892
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| | || || |||| || ||   ||||| | |||||||| ||| |||||||||||    
T  34194991 aataagttttataggaagatgtaaaaacaattttcattggttattggttattgagaaaatgaaagagagagcaaactgaatgcactttgcatttaatttt 34194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 46918215 - 46918273
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  46918215 gtgttatccttaaaataagttttataggaagatctaaaaacaattttcattggttattg 46918273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 16032989 - 16033046
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  16032989 gtgttatccttgaaataagttttataggaagatgtaaaaacaattttcattggttatt 16033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 20847270 - 20847389
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gaggagcacattgaatgcaat 600  Q
    |||||||| || |||||||||| ||||||||||||  ||||||||||||||||| |||||| || || |||| || || |||||  | |||||||| |||    
T  20847270 gtgttttctttggaataagtttcataggaagatgtgcaaacaattttcattggtaattgattatggagaaaatgaaagagagga-aaaattgaatgtaat 20847368  T
Q  601 ttacatttaattttacgagaa 621  Q
    || |||||||||||| |||||    
T  20847369 ttgcatttaattttatgagaa 20847389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 54725627 - 54725671
Alignment:
Q  517 taagttttataggaagatgttaaaacaattttcattggttattga 561  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  54725627 taagttttataggaagatgtaaaaacaattttcattggttattga 54725671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 10115014 - 10114915
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| | |||||||||    
T  10115014 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaatagagcaaattgaatgcactttgcttttaatttt 10114915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 10252114 - 10252015
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| | |||||||||    
T  10252114 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaatagagcaaattgaatgcactttgcttttaatttt 10252015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 22479069 - 22479168
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| |||||| |||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  22479069 aataagttttataggaagatgtaaaaacacttttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 22479168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 37075082 - 37075011
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| || ||| ||||||||||||||||||| || |||||||||||||| ||||| | ||||||||||    
T  37075082 gtgttttctttggaaaaagttttataggaagatgtaaacacaattttcattggctattggttatagaaaaaa 37075011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 620
Target Start/End: Original strand, 579156 - 579258
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  579156 aagttttataggaagatataaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatg 579255  T
Q  618 aga 620  Q
    |||    
T  579256 aga 579258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 10014372 - 10014314
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||    
T  10014372 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaa 10014314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 615
Target Start/End: Original strand, 34722622 - 34722720
Alignment:
Q  517 taagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttta 615  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| | ||  |||||| || | |  ||| | |||||||| ||||||||||||||||||    
T  34722622 taagttttataagaagatgtaaaaacaattttcattggctattggttatgcaaaaaatgaaaaggagagaaaattgaatgtaatttacatttaatttta 34722720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 26724993 - 26725053
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||| || ||||||||||| |  |||||||| |||||||||||||||||||||||||    
T  26724993 gtgttttctttggaataagttttctgagaagatgtaaaaacaattttcattggttattgat 26725053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 30454727 - 30454838
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  |||||||||||||| ||||||| ||||||||||| ||||||||||| | || || |||| || ||   ||||| |||||||||| ||    
T  30454727 gtgttatccttgaaataagttttatagaaagatgtaaaaacaatttt-attggttattggttattgagaaaatgaaagagagagcaaattgaatgcactt 30454825  T
Q  602 tacatttaatttt 614  Q
    | |||||||||||    
T  30454826 tgcatttaatttt 30454838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 621
Target Start/End: Original strand, 14752230 - 14752329
Alignment:
Q  522 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 621  Q
    ||||||||||||||| ||||||||||||||||  ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |||||    
T  14752230 tttataggaagatgtaaaaacaattttcattgactattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatgagaa 14752329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 22456023 - 22456122
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||| | ||||||||||| ||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  22456023 aataagttttataggaagatataaaaacaattttgattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcattttgcatttaatttt 22456122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 28875528 - 28875409
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||||| ||||| | || || |||| || || |  || | |||||||| ||||    
T  28875528 gtgttttctttggaaaaagttttataagaagatgtaaaaacaattttcattggctattggttatggagaaaatgaaagaaaaagaaaattgaatgtaatt 28875429  T
Q  602 tacatttaattttacgagaa 621  Q
    |  ||||||||||| |||||    
T  28875428 tgtatttaattttatgagaa 28875409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 35963258 - 35963155
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||  ||||||||||| ||||||||||| | || || |||| || ||   ||| | ||| |||||||||| |||||||||||| |    
T  35963258 aagttttataggaagatggaaaaacaatttttattggttattggttatggagaaaatgaaagagagagaaaattaaatgcaatttgcatttaattttatg 35963159  T
Q  618 agaa 621  Q
    ||||    
T  35963158 agaa 35963155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 47864297 - 47864194
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||| ||  |||||| || ||   ||  | |||||||| ||||| |||||||||||| |    
T  47864297 aagttttataggaagatgtaaaaacaattttcattgactattgattatgaaaaaaatgaaagagagaaaaaattgaatgtaatttgcatttaattttatg 47864198  T
Q  618 agaa 621  Q
    ||||    
T  47864197 agaa 47864194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 48291925 - 48291826
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||| ||| |||| |||||||||||||  ||||| | |||||||| || |    ||||| |||||||||| ||| |||||||||||    
T  48291925 aataagttttataggaaggtgtaaaaataattttcattggtagttgattacagaaaaaatgaaaaagagagcaaattgaatgcactttccatttaatttt 48291826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 11054330 - 11054429
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| | || ||||||| ||    | ||| | |||||||| ||||| |||||||||||| |    
T  11054330 aagttttataggaagatttaaaaacaattttcattggctattggttatggaaaaaatga----aagagaaaattgaatgtaatttgcatttaattttatg 11054425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 559
Target Start/End: Original strand, 7886632 - 7886676
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  7886632 aataaattttatagaaagatgtaaaaacaattttcattggttatt 7886676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 21214344 - 21214304
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggt 555  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  21214344 aataagttttatagaaagatgtaaaaacaattttcattggt 21214304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 31292726 - 31292670
Alignment:
Q  503 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||| ||||| |||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  31292726 tgttctccttggaattagttctatgggaagatgtaaaaacaattttcattggttatt 31292670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 573
Target Start/End: Complemental strand, 36546661 - 36546593
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| || ||| |||||| |||||||||||| ||| ||||||||||||| ||||| | ||||||||||    
T  36546661 ttttctttggaaaaagtttcataggaagatgtaaaaccaattttcattggctattggttatagaaaaaa 36546593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 36561654 - 36561722
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| || ||| |||||| |||||||||||| ||| ||||||||||||| ||||| | ||||||||||    
T  36561654 ttttctttggaaaaagtttcataggaagatgtaaaaccaattttcattggctattggttatagaaaaaa 36561722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 560
Target Start/End: Complemental strand, 2927408 - 2927353
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||| || ||||||||||||| ||||||||| |||| |||||||||||| |||||    
T  2927408 ttttctttggaataagttttatgggaagatgtaaaaataattttcattggctattg 2927353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 3084188 - 3084239
Alignment:
Q  508 tccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||| ||| |||||||| ||||||||| |||||||| |||||||||||||    
T  3084188 tccttaaaattagttttatgggaagatgtaaaaacaatattcattggttatt 3084239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 553
Target Start/End: Original strand, 50651055 - 50651090
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattg 553  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50651055 aagttttataggaagatgtaaaaacaattttcattg 50651090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 552
Target Start/End: Complemental strand, 3972385 - 3972347
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcatt 552  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  3972385 gaataagttttatgggaagatgtaaaaacaattttcatt 3972347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 552
Target Start/End: Original strand, 3997493 - 3997531
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcatt 552  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  3997493 gaataagttttatgggaagatgtaaaaacaattttcatt 3997531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 560
Target Start/End: Complemental strand, 6438185 - 6438147
Alignment:
Q  522 tttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  6438185 tttataggaagatgtaaaaacaattttcattggctattg 6438147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Original strand, 23910531 - 23910573
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||| |||| |||||||||||| |||||    
T  23910531 aagttttataggaagatgtaaaaataattttcattggctattg 23910573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 32619832 - 32619890
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||| || ||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  32619832 gtgttttctttggaataggttttataagaagatgtaaaaataattttcattggctattg 32619890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 505 - 562
Target Start/End: Complemental strand, 36151038 - 36150980
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaa-acaattttcattggttattgat 562  Q
    |||| ||||||||||||||||| ||||||||| ||| | |||||| |||||||||||||    
T  36151038 tttttcttagaataagttttatgggaagatgtaaaacataatttttattggttattgat 36150980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Original strand, 46711676 - 46711718
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||| |||||||| |||||||| |||||    
T  46711676 aagttttataggaagatgtaaaaacaatattcattggctattg 46711718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Complemental strand, 9264657 - 9264616
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||||||| |||||||| ||||||||||||||||| ||||    
T  9264657 aagttttatatgaagatgtaaaaacaattttcattggctatt 9264616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 35129097 - 35129217
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgtta-aaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaat 600  Q
    |||||||| || ||| ||||||||||||||||||| | |||||||||||||||||||||| | || ||||||| || || | ||| | |||||||| |||    
T  35129097 gtgttttctttggaaaaagttttataggaagatgtaataaacaattttcattggttattggttatggaaaaaatgaaagaaagagaaaattgaatgtaat 35129196  T
Q  601 ttacatttaattttacgagaa 621  Q
    || ||||||||||||||||||    
T  35129197 ttgcatttaattttacgagaa 35129217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 3095778 - 3095881
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| || |  | ||| | |||||||| ||||| |||||||||||| |    
T  3095778 aagttttataggaagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaataaagagaaaattgaatgtaatttgcatttaattttatg 3095877  T
Q  618 agaa 621  Q
    ||||    
T  3095878 agaa 3095881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 11082288 - 11082407
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  11082288 gtgttttctttggaaaaagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 11082387  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  11082388 tgcatttaattttatgagaa 11082407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 16524482 - 16524384
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || | || || || |||||||||| ||| |||||||||||    
T  16524482 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaga-gaacaaattgaatgcactttgcatttaatttt 16524384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 5300658 - 5300702
Alignment:
Q  517 taagttttataggaagatgttaaaacaattttcattggttattga 561  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5300658 taagttttataggaagatgtaaaaacaattttcattggttattga 5300702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 4032090 - 4031991
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||| ||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  4032090 aataagttttatcggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 4031991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 4988046 - 4987947
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  4988046 aataagttttataggaagatgtaaaaataattttcattggtagttgattatagagaaaatgaaaatgagagcaaattgaatgcattttgcatttaatttt 4987947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 610
Target Start/End: Original strand, 16013488 - 16013583
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaa 610  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||    
T  16013488 aataagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcatttttcatttaa 16013583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 21542536 - 21542417
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||| || || |  || | |||||||| ||||    
T  21542536 gtgttttctttggaaaaagttttataggaagatgtaaaaacaatttttattggctattggttatggaaaaaatgaaagaaaaagaaaattgaatgtaatt 21542437  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||| ||| |||||    
T  21542436 tgcatttaatattatgagaa 21542417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 21964071 - 21964008
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcat 565  Q
    ||||| |||||| |||||||||||| | ||||||| |||| |||||| ||||||||||||||||    
T  21964071 gtgttctccttaaaataagttttatggaaagatgtaaaaataatttttattggttattgatcat 21964008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 621
Target Start/End: Original strand, 34177704 - 34177803
Alignment:
Q  522 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 621  Q
    |||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | |||   |||||||| ||||| |||||||||||| |||||    
T  34177704 tttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagataattgaatgtaatttgcatttaattttatgagaa 34177803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 560
Target Start/End: Original strand, 30794247 - 30794293
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  30794247 gaataagttttataggaagatgtaaaaacatttttcattggctattg 30794293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 7274921 - 7274989
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| || |||||||||| || ||||||||| ||||||||||||||||| ||||| | || |||||||    
T  7274921 ttttctttggaataagtttcatgggaagatgtaaaaacaattttcattggctattggttatggaaaaaa 7274989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 3888530 - 3888431
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||||||||||  ||||||||||||| |||  ||||| ||||| |||| || |    || || |||||||||| ||| |||||||||||    
T  3888530 aataagttttataggaagatgtagaaacaattttcatgggtagttgattatagagaaaatgaaaaagagaacaaattgaatgcactttgcatttaatttt 3888431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 25737669 - 25737788
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  25737669 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 25737768  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  25737769 tgcatttaattttatgagaa 25737788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 14805972 - 14805869
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  14805972 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 14805873  T
Q  618 agaa 621  Q
    ||||    
T  14805872 agaa 14805869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 15252966 - 15252863
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  15252966 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 15252867  T
Q  618 agaa 621  Q
    ||||    
T  15252866 agaa 15252863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 35923370 - 35923251
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  35923370 gtgttttctttggaaaaagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 35923271  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  35923270 tgcatttaattttatgagaa 35923251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 45486073 - 45485954
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| |||| |||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  45486073 gtgttttctttggaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 45485974  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  45485973 tgcatttaattttatgagaa 45485954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 46760315 - 46760418
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  46760315 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaatattgaatgtaatttgcatttaattttatg 46760414  T
Q  618 agaa 621  Q
    ||||    
T  46760415 agaa 46760418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 502 - 615
Target Start/End: Original strand, 4910675 - 4910788
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| |||||| ||||||||||||||||||| |||| |||||||||||| ||||||| || ||||||| || ||   ||  | |||||||| ||||    
T  4910675 gtgttttctttagaaaaagttttataggaagatgtaaaaataattttcattggctattgattatggaaaaaatgaaagagagataaaattgaatgtaatt 4910774  T
Q  602 tacatttaatttta 615  Q
    | ||||||||||||    
T  4910775 tgcatttaatttta 4910788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 455 - 613
Target Start/End: Original strand, 19912762 - 19912922
Alignment:
Q  455 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 551  Q
    ||||||||||||||| |||||||||| |   ||||||||||||       |||||||| || ||| ||||||||||| || |||| ||||||||||||||    
T  19912762 cacatttattaagaaaactaaaacataagaatttggagtatagtttttt-gtgttttctttggaaaaagttttatagtaaaatgtaaaaacaattttcat 19912860  T
Q  552 tggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattt 613  Q
    ||||||||| | || ||||||| || || | ||| | |||||||| ||||| ||||||||||    
T  19912861 tggttattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 19912922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 573
Target Start/End: Original strand, 8015723 - 8015786
Alignment:
Q  511 ttagaata-agttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| ||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||    
T  8015723 ttagaatatagttttataagaagatgtaaaaacaatttttattggttattgattatagaaaaaa 8015786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 25944694 - 25944575
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| |||||||||||||||||  |||| | || |||||||  | ||   ||| | |||||||| ||||    
T  25944694 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaataaaagagagagaaaattgaatgtaatt 25944595  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  25944594 tgcatttaattttatgagaa 25944575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 614
Target Start/End: Complemental strand, 39170652 - 39170540
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  ||||||||||||| |||||||| ||||||||||||||| || |||||| || || |||| || ||    |||| |||||||||| ||    
T  39170652 gtgttatccttgaaataagttttatacgaagatgtaaaaacaattttcatttgtcattgattattgagaaaatgaaagagatagcaaattgaatgcactt 39170553  T
Q  602 tacatttaatttt 614  Q
    | |||||||||||    
T  39170552 tgcatttaatttt 39170540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 47779722 - 47779670
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| ||||||||||||| || ||||||||| |||||||||||||||||    
T  47779722 gtgttttctttagaataagtttcatgggaagatgtaaaaacaattttcattgg 47779670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 10248646 - 10248591
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggtta 557  Q
    ||||| |||||  |||||||||||||| ||||||| ||||||||||||||||||||    
T  10248646 gtgttatccttgaaataagttttatagaaagatgtaaaaacaattttcattggtta 10248591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 18102632 - 18102529
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| |||||||||||||||||  |||| | || ||||||| || ||   | | | |||||||| ||||| |||||||||||| |    
T  18102632 aagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatgaaagagagtgaaaattgaatgtaatttgcatttaattttatg 18102533  T
Q  618 agaa 621  Q
    ||||    
T  18102532 agaa 18102529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 20123738 - 20123841
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || ||    || | |||||||| ||||| |||||||||||| |    
T  20123738 aagttttatagcaagatgtaaaaacaattttcattggctattgcttatggaaaaaatgaaagagaaagaaaattgaatgtaatttgcatttaattttatg 20123837  T
Q  618 agaa 621  Q
    ||||    
T  20123838 agaa 20123841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 31769017 - 31769116
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| |||||||||||||||| |  ||||| ||||| ||||  | |    ||||| |||||||||| ||| |||||||||||    
T  31769017 aataagttttataggaagatgtaaaaacaattttcattgatagttgattatagagaaaataaaaatgagagcaaattgaatgcactttgcatttaatttt 31769116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 6191147 - 6191105
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  6191147 aagttttataggaagatgtaaaaacaattttcattggctattg 6191105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 553
Target Start/End: Original strand, 31549947 - 31549996
Alignment:
Q  504 gttttccttagaataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||| ||||||||| |||||||||||||||| ||||||| ||||||||    
T  31549947 gttttctttagaataaattttataggaagatgtaaaaacaactttcattg 31549996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 24151638 - 24151682
Alignment:
Q  516 ataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||    
T  24151638 ataagttttataggaagatgtaaaaacaattttcactgattattg 24151682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 22632207 - 22632136
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| ||  ||||||||| || ||||||||| ||||||||||||||||| ||||| | || |||||||    
T  22632207 gtgttttctttgaaataagtttcatgggaagatgtaaaaacaattttcattggatattggttatggaaaaaa 22632136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 38260421 - 38260322
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||| ||| ||| |||| ||||||||||||||||| || || || |||| || ||   ||||| ||| |||||| ||| |||||||||||    
T  38260421 aataagttttatagaaagttgtaaaaataattttcattggttatttattattgagaaaatgaaagagagagcaaattaaatgcactttgcatttaatttt 38260322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 573
Target Start/End: Original strand, 47557663 - 47557714
Alignment:
Q  522 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||||||||||||| ||||||||||||||||| |||| || || |||||||    
T  47557663 tttataggaagatgtaaaaacaattttcattggctattaattatggaaaaaa 47557714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 4069105 - 4069063
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||    
T  4069105 aagttttatagaaagatgtaaaaagaattttcattggttattg 4069063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Original strand, 12632402 - 12632444
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||| |||||||||||| ||||||||||||||||| |||||    
T  12632402 aagtttcataggaagatgtaaaaacaattttcattggctattg 12632444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 35888024 - 35888082
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| |||||||||||||||| ||||||||||||||| ||  ||||| ||||| ||||    
T  35888024 aataacttttataggaagatgtaaaaacaattttcattagtagttgattatagagaaaa 35888082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 616
Target Start/End: Original strand, 18800856 - 18800889
Alignment:
Q  583 gagcacattgaatgcaatttacatttaattttac 616  Q
    ||||| ||||||||||||||||||||||||||||    
T  18800856 gagcaaattgaatgcaatttacatttaattttac 18800889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 36576525 - 36576476
Alignment:
Q  508 tccttagaataagttttataggaagatgttaaaacaattttcattggtta 557  Q
    |||||||||||||||| || | ||||||| |||| |||||||||||||||    
T  36576525 tccttagaataagtttcatggaaagatgtaaaaataattttcattggtta 36576476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 48879495 - 48879446
Alignment:
Q  508 tccttagaataagttttataggaagatgttaaaacaattttcattggtta 557  Q
    ||||| ||||||||||||||| ||||||| |||| |||| ||||||||||    
T  48879495 tccttggaataagttttatagaaagatgtaaaaataattctcattggtta 48879446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 47867995 - 47867876
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  47867995 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 47867896  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  47867895 tgcatttaattttatgagaa 47867876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 455 - 621
Target Start/End: Complemental strand, 4058880 - 4058712
Alignment:
Q  455 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 551  Q
    ||||||||||||||| |||||||||| |   ||||||||||||       |||||||| ||  || ||||||||||||||||||| ||||||||||||||    
T  4058880 cacatttattaagaaaactaaaacataagaatttggagtatagtttttt-gtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcat 4058782  T
Q  552 tggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgagaa 621  Q
    ||||||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |||||    
T  4058781 tggttattggttatggaaaaaatgaaagagagagaaaattgaatgaaatttgcatttaattttatgagaa 4058712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 20281707 - 20281588
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || |  || | |||||||| ||||    
T  20281707 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaaaagaaaattgaatgtaatt 20281608  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  20281607 tgcatttaattttatgagaa 20281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 621
Target Start/End: Original strand, 17794590 - 17794696
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatttacatttaattt 613  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||| || ||||||  | || ||| ||| | |||||||| ||||||||||||||||    
T  17794590 aataaattttataggaagatgtaaaaacaattttcattggctattgattatggaaaaattg-gaagagagagaaaattgaatgtaatttacatttaattt 17794688  T
Q  614 tacgagaa 621  Q
    || |||||    
T  17794689 tatgagaa 17794696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 615
Target Start/End: Original strand, 56318106 - 56318219
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||| ||||||||||||||| ||||||||||||||| | ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  56318106 gtgttttctttggaaaaaggtttataggaagatgtaaaaacaattttcattagctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 56318205  T
Q  602 tacatttaatttta 615  Q
    ||||||||||||||    
T  56318206 tacatttaatttta 56318219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 502 - 602
Target Start/End: Complemental strand, 7654733 - 7654633
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||| | ||||||||||||||||| ||||||| || ||||||| || || | ||| | |||||||| ||||    
T  7654733 gtgttttctttggaaaaagttttataggaagatataaaaacaattttcattggctattgattatggaaaaaatgaaagaaagagaaaattgaatgtaatt 7654634  T
Q  602 t 602  Q
    |    
T  7654633 t 7654633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 521 - 621
Target Start/End: Complemental strand, 29203603 - 29203503
Alignment:
Q  521 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacgaga 620  Q
    |||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| ||||    
T  29203603 ttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatgaga 29203504  T
Q  621 a 621  Q
    |    
T  29203503 a 29203503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 2229363 - 2229244
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||| || || |  || | |||||||| ||||    
T  2229363 gtgttttctttggaaaaagttttataggaagatgtaaaaacaatttttattggctattggttatggaaaaaatgaaagaaaaagaaaattgaatgtaatt 2229264  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||| ||| |||||    
T  2229263 tgcatttaatattatgagaa 2229244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 14332876 - 14332757
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||| |||||  |||| | ||  |||||| || || | ||| | |||||||| ||||    
T  14332876 gtgttttctttggaaaaagttttataggaagatgtaaaaacaatttttattggccattggttatgaaaaaaatgaaagaaagagaaaattgaatgtaatt 14332777  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  14332776 tgcatttaattttatgagaa 14332757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 20716280 - 20716177
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  20716280 aagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagtgagaaaattgaatgtaatttgcatttaattttatg 20716181  T
Q  618 agaa 621  Q
    ||||    
T  20716180 agaa 20716177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 614
Target Start/End: Original strand, 23978169 - 23978263
Alignment:
Q  520 gttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  23978169 gttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 23978263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 16604898 - 16604939
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  16604898 aagttttataggaagatgttaaaacaattttcattggctatt 16604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 28669037 - 28669094
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||||| |||||| | |||||||||||| |||| ||||||||||||||||||||||    
T  28669037 gtgttttctttagaaaaggttttataggaaaatgtaaaaacaattttcattggttatt 28669094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 40553885 - 40553828
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||| |||||||||||||||| |||| ||||||| ||||||| ||||||||||||||    
T  40553885 gtgttatccttagaataagtttcatagaaagatgtaaaaacaagtttcattggttatt 40553828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 46070571 - 46070612
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggtt 556  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  46070571 aataagttttataggaagatgtaaaaacaattttcattggtt 46070612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 5483314 - 5483366
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| ||| ||||||||| |||||||||||| |||||||||||||||||    
T  5483314 gtgttttctttaaaataagtttaataggaagatgtaaaaacaattttcattgg 5483366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 5841815 - 5841927
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  ||||| |||||||||||||||| |||| |||||||||||||||||| | || ||||||| || ||   ||||| ||||| |||| ||    
T  5841815 gtgttatccttgaaataaattttataggaagatgtaaaaataattttcattggttattggttattgaaaaaatgaaagagagagcaaattgattgcactt 5841914  T
Q  602 tacatttaatttt 614  Q
    | |||| ||||||    
T  5841915 tgcattgaatttt 5841927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 49080360 - 49080320
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggt 555  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  49080360 aataagttttataggaagatgtaaaaacaattttcattggt 49080320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 8178288 - 8178387
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||| |||||||| ||||||||||  ||||||||||| | || || |||| || ||   ||||| |||||||||| ||| |||||||||||    
T  8178288 aataagttttataagaagatgtaaaaacaatttgtattggttattggttattgagaaaatgaaagagagagcaaattgaatgcactttgcatttaatttt 8178387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 609
Target Start/End: Original strand, 17799182 - 17799277
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacattta 609  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||  | || || |||| ||||||  || || ||| |||||||||| ||||||    
T  17799182 gaattagttttatgggaagatgtaaaaacaattttcattggttatttgttatggagaaaatgagagggagaacaaattaaatgcaatttgcattta 17799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 26916425 - 26916322
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| | || ||||||| || || |  |  | |||||||| ||||| |||||||||||| |    
T  26916425 aagttttataggaagatgtaaaaacaatttttattggctattggttatggaaaaaatgaaagaaaaataaaattgaatgtaatttgcatttaattttatg 26916326  T
Q  618 agaa 621  Q
    ||||    
T  26916325 agaa 26916322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 28142658 - 28142729
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| || ||| |||||||||||||||| ||||| ||||||||||||||||||  ||||| ||||| ||||    
T  28142658 gtgttatctttaaaataagttttataggaggatgtaaaaacaattttcattggtagttgattatagagaaaa 28142729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 553
Target Start/End: Complemental strand, 29511541 - 29511490
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 553  Q
    ||||| || ||| |||||||||||||||||||||| ||||||||||||||||    
T  29511541 gtgttatctttaaaataagttttataggaagatgtaaaaacaattttcattg 29511490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 35310778 - 35310849
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| ||||||||||||| || | ||||||| ||||||||||||||||| ||||| | || |||||||    
T  35310778 gtgttttctttagaataagtttcatggaaagatgtaaaaacaattttcattggctattggttatggaaaaaa 35310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 615
Target Start/End: Original strand, 41414663 - 41414759
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttta 615  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||| || ||||||| || ||   ||  | |||||||| ||||| ||||||||||||    
T  41414663 aagttttataggaagatgtaaaaacaatttttattggctattgattat-gaaaaaatgaaagagagaaaaaattgaatgtaatttgcatttaatttta 41414759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 47516240 - 47516281
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggtt 556  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  47516240 aataagttttataggaagaagtaaaaacaattttcattggtt 47516281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 8013125 - 8013237
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  ||||||||| |||| ||||||| ||||||||||| ||||||||||  ||||||| |||| || ||   || || | ||||||||| |    
T  8013125 gtgttatccttgaaataagtttcatagaaagatgtaaaaacaatttttattggttattagtcatagagaaaatgaaagagagaacataatgaatgcaaat 8013224  T
Q  602 tacatttaatttt 614  Q
    | |||||||||||    
T  8013225 tgcatttaatttt 8013237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 614
Target Start/End: Original strand, 28318473 - 28318565
Alignment:
Q  522 tttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |     || | |||||||||| |||||||||||||||    
T  28318473 tttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaagctagtaaattgaatgcattttacatttaatttt 28318565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 48793664 - 48793716
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||    
T  48793664 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattgg 48793716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 562
Target Start/End: Complemental strand, 50145840 - 50145792
Alignment:
Q  514 gaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    ||||||||||||| ||||||||| || |||||||||||||| |||||||    
T  50145840 gaataagttttatgggaagatgtaaacacaattttcattggctattgat 50145792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 55580785 - 55580729
Alignment:
Q  503 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||||| || ||| ||||| ||||||||||||| ||||||||||||||||| ||||    
T  55580785 tgttttctttggaaaaagttgtataggaagatgtaaaaacaattttcattggctatt 55580729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 5064704 - 5064803
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||| |||||||||| ||||||||||||||| ||  ||||| ||||| |||| || |    ||| | |||||||||| ||| |||||||||||    
T  5064704 aataagttttaaaggaagatgtaaaaacaattttcattagtagttgattatagagaaaatgaaaaagagagtaaattgaatgcactttgcatttaatttt 5064803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 21722731 - 21722778
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||||||||||||||||| |||| |||||||||||  |||||||    
T  21722731 aataagttttataggaagatgtaaaaataattttcattgactattgat 21722778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 560
Target Start/End: Complemental strand, 24940478 - 24940423
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||| || ||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  24940478 ttttctttggaaaaagttttataagaagatgtaaaaacaattttcgttggttattg 24940423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 558
Target Start/End: Complemental strand, 32203316 - 32203273
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttat 558  Q
    |||||||||||| ||||||| | |||||||||||||||||||||    
T  32203316 aataagttttatgggaagatataaaaacaattttcattggttat 32203273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 553
Target Start/End: Original strand, 32323298 - 32323349
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||| ||| |||||| ||||| ||||||||| ||||||||||||||||    
T  32323298 gtgttttctttaaaataagatttatgggaagatgtaaaaacaattttcattg 32323349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 37912000 - 37911929
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| || ||| |||||||||||||| || |||| ||||||||||||||||||  ||||| ||||| ||||    
T  37912000 gtgttatctttaaaataagttttatagaaatatgtaaaaacaattttcattggtagttgattatagagaaaa 37911929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 50768556 - 50768501
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggtta 557  Q
    ||||||||||| |||||||||| || | ||||||| |||| |||||||||||||||    
T  50768556 gtgttttccttggaataagtttcatggaaagatgtaaaaataattttcattggtta 50768501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 561
Target Start/End: Complemental strand, 53848576 - 53848517
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattga 561  Q
    ||||| |||||  ||||| ||||||||||||| || ||||||||||| ||||||||||||    
T  53848576 gtgttatccttgaaataatttttataggaagacgtaaaaacaattttaattggttattga 53848517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 560
Target Start/End: Complemental strand, 10069797 - 10069755
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||    
T  10069797 aagttttatagaaagatgtaaaaacaattttcattggctattg 10069755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 32410431 - 32410393
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  32410431 aataagttttataggaagatgtaaaaataattttcattg 32410393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 39078272 - 39078216
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||||| || ||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  39078272 gtgttttctttggaaaaagttttatag-aagatgtaaaaacaattttcattggctatt 39078216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 614
Target Start/End: Complemental strand, 5950557 - 5950445
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  |||||||||||||||||||||| |||||||||||||||||| |||| | || ||||||| || ||   ||||| ||| |||||| ||    
T  5950557 gtgttatccttgaaataagttttataggaagatgtaaaaacaattttcattggtcattggttattgaaaaaatgaaagagagagcaaattaaatgcactt 5950458  T
Q  602 tacatttaatttt 614  Q
    |||||||||||||    
T  5950457 tacatttaatttt 5950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 613
Target Start/End: Complemental strand, 2126156 - 2126045
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  2126156 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 2126057  T
Q  602 tacatttaattt 613  Q
    | ||||||||||    
T  2126056 tgcatttaattt 2126045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 43765412 - 43765355
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  43765412 gtgttttctttagaataagttttataggaagatgtaaaaacatttttcattggttatt 43765355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 7397811 - 7397712
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||| |||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || |  | ||||| |||||||||| ||| |||||||||||    
T  7397811 aataaattttataggaagatgtaaaaacaattttcattggtatttgattatagagaaaatgaaaaaaagagcaaattgaatgcactttgcatttaatttt 7397712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 561
Target Start/End: Original strand, 8889740 - 8889799
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattga 561  Q
    ||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8889740 gtgttatccttgaaataagttttataggaagatgtaaaaacaattttcattggttattga 8889799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 15912303 - 15912204
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||| | ||| |||| || | |  ||||| |||||||||| ||| |||||||||||    
T  15912303 aataagttttataggaagatgtaaaaacaattttcattgattgttgattacagagaaaatgaaaaggagagcaaattgaatgcagtttgcatttaatttt 15912204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 39555645 - 39555748
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| |||||||||| ||||| |||||||||||| |    
T  39555645 aagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaacattgaatgtaatttgcatttaattttatg 39555744  T
Q  618 agaa 621  Q
    ||||    
T  39555745 agaa 39555748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 508 - 613
Target Start/End: Original strand, 52841494 - 52841599
Alignment:
Q  508 tccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatt 607  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||  | ||||  |||| || |||| ||||| | ||| |||||||| || |    
T  52841494 tccttaaaataagtttcatagaaagatgttaaaacaattttcattggttattagttatagggaaaatgaaaggaagagcaaaatgattgcaatttgcact 52841593  T
Q  608 taattt 613  Q
    ||||||    
T  52841594 taattt 52841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 502 - 614
Target Start/End: Complemental strand, 37538927 - 37538815
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  |||||||||||||||||||||| || |||||||||||||||| ||| | || || |||| || ||  |||||| |||||||||| ||    
T  37538927 gtgttatccttgaaataagttttataggaagatgtaaagacaattttcattggttgttggttatcgagaaaatgaaagagggagcaaattgaatgcactt 37538828  T
Q  602 tacatttaatttt 614  Q
    | || ||||||||    
T  37538827 tgcagttaatttt 37538815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 503 - 562
Target Start/End: Original strand, 3861739 - 3861798
Alignment:
Q  503 tgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    ||||||| |||||||||||||||| | ||||||| ||||||||||||||||| |||||||    
T  3861739 tgttttctttagaataagttttattgaaagatgtaaaaacaattttcattggctattgat 3861798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 6785574 - 6785455
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| | ||    
T  6785574 gtgttttcttttgaaaaagttttatatgaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtagtt 6785475  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  6785474 tgcatttaattttatgagaa 6785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 15959699 - 15959802
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||| |    
T  15959699 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaattaaagagagagaaaattgaatgtaatttgcatttaattttatg 15959798  T
Q  618 agaa 621  Q
    ||||    
T  15959799 agaa 15959802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 32624064 - 32624167
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| |||||||||||||||||  |||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  32624064 aagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaattttatg 32624163  T
Q  618 agaa 621  Q
    ||||    
T  32624164 agaa 32624167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 40718780 - 40718677
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    |||||||||| |||| |||  |||||||||||||||| ||||| | |||||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  40718780 aagttttatatgaagttgtagaaacaattttcattggctattggtaatagaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 40718681  T
Q  618 agaa 621  Q
    ||||    
T  40718680 agaa 40718677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 44510275 - 44510374
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||| |||||||||||| ||| |||||||||||||||| | |||||| ||||| |||| || | |  ||||| |||||||||| ||| |||||||||||    
T  44510275 aataaattttataggaagttgtaaaaacaattttcattgataattgattatagagaaaatgaaaaggagagcaaattgaatgcactttgcatttaatttt 44510374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 615
Target Start/End: Original strand, 28120817 - 28120911
Alignment:
Q  521 ttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttta 615  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| || ||||||| || ||   ||| | |||||||| ||||| ||||||||||||    
T  28120817 ttttatgggaagatgtaaaaacaattttcattggctattgattatggaaaaaatgaaagagagagaaaattgaatgtaatttgcatttaatttta 28120911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 16688241 - 16688200
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggtt 556  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  16688241 aataagttttataggaagatgtaaaaacaattttcattggtt 16688200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 32318616 - 32318661
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  32318616 aataagttttattggaagatgtaaaaacaattttcattggttattg 32318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 614
Target Start/End: Original strand, 5858414 - 5858526
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    ||||| |||||  |||||||||||||||||||| | ||||||||||||||||| ||||| | || || |||| || |    ||||| |||||||||| ||    
T  5858414 gtgttatccttgaaataagttttataggaagatataaaaacaattttcattggctattggttattgagaaaatgaaacagagagcaaattgaatgcactt 5858513  T
Q  602 tacatttaatttt 614  Q
    | |||||||||||    
T  5858514 tgcatttaatttt 5858526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 10558799 - 10558859
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||| || |||||| |||||| ||||||||| ||||||||||||||||| |||||||    
T  10558799 gtgttttctttggaataatttttatgggaagatgtaaaaacaattttcattggctattgat 10558859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 614
Target Start/End: Complemental strand, 13351782 - 13351686
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| ||||| |||| || | |  || || |||||||||| ||| |||||| ||||    
T  13351782 aagttttataggaagatgtaaaaacaattttcattggtagttgattatagagaaaatgaaaaggagaacaaattgaatgcactttgcatttagtttt 13351686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 11241145 - 11241074
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| || ||| ||||||||||||||||||| ||| ||||||||||||| ||||| | || |||||||    
T  11241145 gtgttttctttggaaaaagttttataggaagatgtaaaaccaattttcattggctattggttatggaaaaaa 11241074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 12449026 - 12449129
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| |||||||||||||||||  |||| | || |||||||  | ||   ||| | |||||||| ||||| |||||||||||| |    
T  12449026 aagttttataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatcaaagagagagaaaattgaatgtaatttgcatttaattttatg 12449125  T
Q  618 agaa 621  Q
    ||||    
T  12449126 agaa 12449129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 24190587 - 24190469
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||| | |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | ||| |||| ||||    
T  24190587 gtgttttctttggaaaaagttttatacggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaatt-aatgtaatt 24190489  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  24190488 tgcatttaattttatgagaa 24190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 24728670 - 24728741
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||  |||||| || |||||||    
T  24728670 gtgttttctttcgaataagtttcatgggaagatgtaaaaacaattttcattggcaattgattatggaaaaaa 24728741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 25185360 - 25185459
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||| ||||||||||  ||||| ||||| |||| || |    || || |||||||||| ||| |||||||||||    
T  25185360 aataagttttataggaagatgtgaaaacaactttcattggtagttgattatagagaaaatgaaaaagagaacaaattgaatgcactttgcatttaatttt 25185459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 45840122 - 45840220
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||| ||||||||||||||||  ||||||||||||||||||  ||||| |||||||||| || |    ||||| |||||||||| ||| |||||||||||    
T  45840122 aatatgttttataggaagatga-aaaacaattttcattggtagttgattatagaaaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 45840220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 47600098 - 47600201
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | ||  |||||| || ||    || | |||||||| ||||| |||||||||||| |    
T  47600098 aagttttataggaagatgtaaaaacaattttcattggctattgtttatgaaaaaaatgaaagagaaagaaaattgaatgtaatttgcatttaattttatg 47600197  T
Q  618 agaa 621  Q
    ||||    
T  47600198 agaa 47600201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 30701441 - 30701499
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||| ||||| ||||    
T  30701441 aataagttttataggaagatgtgaaaataattttcattggtagttgattatagagaaaa 30701499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 573
Target Start/End: Complemental strand, 6787005 - 6786885
Alignment:
Q  455 cacatttattaagaacactaaaacatga---tttggagtatagnnnnnnngtgttttccttagaataagttttataggaagatgttaaaacaattttcat 551  Q
    |||| |||||||||| ||||||||||||   ||||||||||||       |||||||| || ||| |||||||||| |||||||| || |||||||||||    
T  6787005 cacacttattaagaaaactaaaacatgagaatttggagtatagtttttt-gtgttttctttggaaaaagttttatatgaagatgtaaacacaattttcat 6786907  T
Q  552 tggttattgatcatagaaaaaa 573  Q
    ||| ||||| | || |||||||    
T  6786906 tggctattggttatggaaaaaa 6786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 28016807 - 28016860
Alignment:
Q  520 gttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||||||||||||||| ||||||||||||||||| ||||| | ||| ||||||    
T  28016807 gttttataggaagatgtaaaaacaattttcattggctattggttataaaaaaaa 28016860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 562
Target Start/End: Original strand, 7468006 - 7468066
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||| || ||| |||||||| |||||||||| || |||||||||||||| |||||||    
T  7468006 gtgttttctttggaaaaagttttaaaggaagatgtaaatacaattttcattggctattgat 7468066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 35691495 - 35691391
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaag-gagaggaggagcacattgaatgcaatttacatttaattttac 616  Q
    |||||||||||| |||||| ||||||||||| ||||| ||||| | || |||||||  || || | ||| | |||||||| ||||| ||||||||||||     
T  35691495 aagttttatagggagatgtaaaaacaatttttattggctattggttatggaaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttat 35691396  T
Q  617 gagaa 621  Q
    |||||    
T  35691395 gagaa 35691391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 44148879 - 44148931
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| || |||||||||| || ||||||||| |||||||||||||||||    
T  44148879 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattgg 44148931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 562
Target Start/End: Complemental strand, 52985051 - 52984991
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    |||||||| || |||||||||| |  ||||||||| ||||||||||||||||| |||||||    
T  52985051 gtgttttctttggaataagtttcacgggaagatgtaaaaacaattttcattggctattgat 52984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 560
Target Start/End: Original strand, 42965877 - 42965916
Alignment:
Q  521 ttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  42965877 ttttataggaagatgtaaaaacaattttcattggctattg 42965916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 47014550 - 47014652
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    |||||||||||||| |||| ||||||||||||||||  ||||| | || ||||||| || ||   ||| | ||||||||  ||||||||||||||||| |    
T  47014550 aagttttataggaaaatgtaaaaacaattttcattgactattggttatggaaaaaatgaaagagagagaaaattgaatg-tatttacatttaattttatg 47014648  T
Q  618 agaa 621  Q
    ||||    
T  47014649 agaa 47014652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 30221843 - 30221785
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    |||||||| ||| |||||||||||| ||||||||| |||||| |||| ||||| |||||    
T  30221843 gtgttttctttaaaataagttttatgggaagatgtaaaaacattttttattggatattg 30221785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 50176627 - 50176569
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| |||||||||||||||| ||||||||||| ||||||  ||||| ||||| ||||    
T  50176627 aataaattttataggaagatgtaaaaacaatttttattggtagttgattatagagaaaa 50176569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 2246057 - 2246114
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    |||||||| ||  ||||||||||||||||| |||| |||| |||||||||||| ||||    
T  2246057 gtgttttctttgaaataagttttataggaatatgtaaaaagaattttcattggctatt 2246114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 35366259 - 35366304
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattg 560  Q
    ||||| |||||||| ||||||| ||||||||||| |||||||||||    
T  35366259 aataaattttatagaaagatgtaaaaacaattttaattggttattg 35366304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 6686486 - 6686383
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  6686486 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 6686387  T
Q  618 agaa 621  Q
    ||||    
T  6686386 agaa 6686383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 11261943 - 11262046
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||| |||||||||||| |    
T  11261943 aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattttatg 11262042  T
Q  618 agaa 621  Q
    ||||    
T  11262043 agaa 11262046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 43590005 - 43590124
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||| | |||||||| ||||    
T  43590005 gtgttttcttttgaaaaagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatt 43590104  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  43590105 tgcatttaattttatgagaa 43590124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 614
Target Start/End: Original strand, 10153985 - 10154083
Alignment:
Q  516 ataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| || |||| || ||    |||| |||||||||| ||| |||||||||||    
T  10153985 ataagttttataggaagatgtaaaaacaattttcattggttattggtcattgagaaaatgaaagagatagcaaattgaatgcactttgcatttaatttt 10154083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 12912350 - 12912449
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |  | ||||||| || ||   ||||| ||| |||||| ||| |||||||||||    
T  12912350 aataagttttataggaagatgtaaaaacaattttcattggttattggttgttgaaaaaatgaaagagagagcaaattaaatgcactttgcatttaatttt 12912449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 38130159 - 38130278
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| |||||| |||||||||||||| |||| |||| |||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| |||     
T  38130159 gtgttttctttagaaaaagttttataggaatatgtaaaaataattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatc 38130258  T
Q  602 tacatttaattttacgagaa 621  Q
    |||||||||||||| |||||    
T  38130259 tacatttaattttatgagaa 38130278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 38280949 - 38280846
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| || ||||||| || ||   ||| | |||||||  ||||| |||||||||||| |    
T  38280949 aagttttataggaaaatgtaaaaacaattttcattggttattgattatggaaaaaatgaaagagagagaaaattgaatataatttgcatttaattttatg 38280850  T
Q  618 agaa 621  Q
    ||||    
T  38280849 agaa 38280846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Complemental strand, 8959745 - 8959646
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcataga-aaaaaggagaggaggagcacattgaatgcaatttacatttaattt 613  Q
    |||||||||||||||||||||| |||||||||||||||| |  ||||| ||||| |||| ||| | || ||||| |||||| ||| ||||||||||||||    
T  8959745 aataagttttataggaagatgtaaaaacaattttcattgatagttgattatagagaaaatggaaaaga-gagcaaattgaacgcactttacatttaattt 8959647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 502 - 613
Target Start/End: Complemental strand, 20644132 - 20644021
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagag-gaggagcacattgaatgcaat 600  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || || |||| | | |||||||| |||    
T  20644132 gtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagg-gaaaattgaatgtaat 20644034  T
Q  601 ttacatttaattt 613  Q
    || ||||||||||    
T  20644033 ttgcatttaattt 20644021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 518 - 614
Target Start/End: Original strand, 37522648 - 37522744
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||    
T  37522648 aagttttataggaagatgtaaaaacaattttcattggctattgtttatggaaaaaatgaaagacagagaaaattgaatgtaatttgcatttaatttt 37522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 42273765 - 42273648
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||||| ||||| | || || |||| || ||   ||| | |||||||||||||    
T  42273765 gtgttttctttggaaaaagttttataagaagatgtaaaaacaattttcattggctattggttatggagaaaatgaaag--agagaaaattgaatgcaatt 42273668  T
Q  602 tacatttaattttacgagaa 621  Q
    | |||||||||||| |||||    
T  42273667 tgcatttaattttatgagaa 42273648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 37562821 - 37562924
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||||||||||| ||||||||||||||| | ||||| | || ||||||| || ||   ||| | |||||||| ||||| |||||||||||| |    
T  37562821 aagttttataggaagatgtaaaaacaattttcattagctattgtttatggaaaaaatgaaagacagagaaaattgaatgtaatttgcatttaattttatg 37562920  T
Q  618 agaa 621  Q
    ||||    
T  37562921 agaa 37562924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 5369087 - 5369128
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggtt 556  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  5369087 aataagttttataggaagatgtaaaaacaattttcattggtt 5369128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 614
Target Start/End: Original strand, 5659584 - 5659676
Alignment:
Q  523 ttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggag-gagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||| ||||||||||| ||||||  ||||| |||||||||| || |  ||  |||| |||||||||| |||||||||||||||    
T  5659584 ttataggaagatgtaaaaacaatttttattggtagttgattatagaaaaaatgaaaaaagaaagcaaattgaatgcactttacatttaatttt 5659676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 3463871 - 3463970
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||| | ||||||||||| ||||||  ||||| ||||| |||| || |    ||||| |||||||||| ||| |||||||||||    
T  3463871 aataagttttataggaagatataaaaacaatttttattggtagttgattatagagaaaatgaaaaagagagcaaattgaatgcactttgcatttaatttt 3463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 34425432 - 34425378
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaa 572  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||| || ||||||    
T  34425432 aagttttataggaatatgtaaaaacaattttcattggctattgattatggaaaaa 34425378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 19413259 - 19413207
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| ||  |||||||||||| ||||||||| |||||||||||||||||    
T  19413259 gtgttttctttgaaataagttttatgggaagatgtaaaaacaattttcattgg 19413207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 29307243 - 29307283
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggt 555  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  29307243 aataagttttataggaagatgtaaaaataattttcattggt 29307283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 39505276 - 39505328
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||| || ||||||||||||| | ||||||| |||||||||||||||||    
T  39505276 gtgttttctttggaataagttttatggtaagatgtaaaaacaattttcattgg 39505328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 573
Target Start/End: Original strand, 1144534 - 1144605
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    ||||| || ||| ||||| ||||||||||| |||| ||||||||||||||||||  ||||| ||||| ||||    
T  1144534 gtgttatctttaaaataaattttataggaatatgtaaaaacaattttcattggtagttgattatagagaaaa 1144605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 5736296 - 5736395
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    ||||| |||||||||||| ||| ||||||||||||||| ||  ||||| | ||| |||| || |||  ||||| |||||| ||| ||| |||||||||||    
T  5736296 aataaattttataggaagttgtaaaaacaattttcatttgtcgttgattacagagaaaatgaaagggagagcaaattgaacgcattttgcatttaatttt 5736395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 553
Target Start/End: Original strand, 5984151 - 5984202
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||| || ||||||||||||||| || |||| ||||||||||||||||    
T  5984151 gtgttttctttggaataagttttatagaaatatgtaaaaacaattttcattg 5984202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 8506536 - 8506497
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattgg 554  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  8506536 aataagttttatagaaagatgtaaaaacaattttcattgg 8506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 553
Target Start/End: Complemental strand, 25840982 - 25840931
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattg 553  Q
    |||||||| || |||||||||| || ||||||||| ||||||||||||||||    
T  25840982 gtgttttctttggaataagtttcatgggaagatgtaaaaacaattttcattg 25840931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 16153402 - 16153454
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcataga 568  Q
    |||||||||||||||||||||| ||||| ||||||||||||  ||||| |||||    
T  16153402 aataagttttataggaagatgtaaaaac-attttcattggtagttgattataga 16153454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 562
Target Start/End: Complemental strand, 17351503 - 17351446
Alignment:
Q  505 ttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgat 562  Q
    ||||| || ||||||||||||| | ||||||| ||||||||||| ||||| |||||||    
T  17351503 ttttcgttggaataagttttatggaaagatgtaaaaacaattttaattggctattgat 17351446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 553
Target Start/End: Complemental strand, 32017803 - 32017770
Alignment:
Q  520 gttttataggaagatgttaaaacaattttcattg 553  Q
    ||||||||||||||||| ||||||||||||||||    
T  32017803 gttttataggaagatgtaaaaacaattttcattg 32017770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 621
Target Start/End: Complemental strand, 10163 - 10044
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||||||||  ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  10163 gtgttttctttagaaaaagttttataggaagatgtaaaaacaattttcattgactattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 10064  T
Q  602 tacatttaattttacgagaa 621  Q
    | ||||||||| || |||||    
T  10063 tgcatttaattgtatgagaa 10044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 621
Target Start/End: Original strand, 3471 - 3590
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatt 601  Q
    |||||||| || ||| ||||||||||||||||||| |||| |||||||||||| ||||| | || ||||||| || ||   ||| | |||||||| ||||    
T  3471 gtgttttcttttgaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaagagagagaaaattgaatgtaatt 3570  T
Q  602 tacatttaattttacgagaa 621  Q
    | ||||||||| || |||||    
T  3571 tgcatttaattgtatgagaa 3590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Original strand, 632 - 735
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| | || ||||||| || || | ||  | |||||||| ||||| |||||||||||| |    
T  632 aagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagataaaattgaatgtaatttgcatttaattttatg 731  T
Q  618 agaa 621  Q
    ||||    
T  732 agaa 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 78059 - 77956
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||| ||||||||||||| |||||||||||||||||  |||| | || ||||||| || || | | | | |||||||| |||||||||||||||||| |    
T  78059 aagttgtataggaagatgtaaaaacaattttcattggccattggttatggaaaaaatgaaagaaagtgaaaattgaatgtaatttacatttaattttatg 77960  T
Q  618 agaa 621  Q
    ||||    
T  77959 agaa 77956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 5931 - 6030
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaatttt 614  Q
    |||||||||||||||||||||| |||||||||||| ||| |  ||||| |||||||||| || |    ||| | |||||||||| ||| |||||||||||    
T  5931 aataagttttataggaagatgtaaaaacaattttccttgatagttgattatagaaaaaatgaaaaagagagtaaattgaatgcactttgcatttaatttt 6030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 40297 - 40226
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||| || |||||| |||||||| ||| ||| ||||||||||||||||| ||||| | ||||||||||    
T  40297 gtgttttctttggaataaattttatagaaagttgtaaaaacaattttcattggctattggttatagaaaaaa 40226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 1710 - 1767
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||||||||| |||| ||||| || ||||||||| |||||| |||||||||||||||    
T  1710 gtgttttccttggaattagtttcatgggaagatgtaaaaacatttttcattggttatt 1767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 621
Target Start/End: Complemental strand, 154963 - 154860
Alignment:
Q  518 aagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaaggagaggaggagcacattgaatgcaatttacatttaattttacg 617  Q
    ||||||||||| ||||||| |||||||||| |||||| ||||| | || ||||||| || ||   ||| | ||| |||| ||||| |||||||||||| |    
T  154963 aagttttatagaaagatgtaaaaacaatttacattggctattggttatggaaaaaatgaaagatagagaaaatttaatgtaatttgcatttaattttatg 154864  T
Q  618 agaa 621  Q
    ||||    
T  154863 agaa 154860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 3273 - 3215
Alignment:
Q  515 aataagttttataggaagatgttaaaacaattttcattggttattgatcatagaaaaaa 573  Q
    |||||||||||||||||||| | |||||||||| |||||||  ||||| ||||| ||||    
T  3273 aataagttttataggaagatctaaaaacaatttccattggtagttgattatagagaaaa 3215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 160962 - 161019
Alignment:
Q  502 gtgttttccttagaataagttttataggaagatgttaaaacaattttcattggttatt 559  Q
    ||||| |||||  ||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  160962 gtgttatccttgaaataagtttgatagaaagttgtaaaaacaattttcattggttatt 161019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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