View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_21 (Length: 389)
Name: NF6745_low_21
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 4176250 - 4176598
Alignment:
| Q |
22 |
agaccgaacaccaagcctgaaaattaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaactagagttgaaacc |
121 |
Q |
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| T |
4176250 |
agaccgaacaccaagcctggaaattaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaactagagttgaaacc |
4176349 |
T |
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| Q |
122 |
tgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaattt |
221 |
Q |
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| T |
4176350 |
tgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaattt |
4176449 |
T |
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| Q |
222 |
ggaatatctgagggatccaattctggcacgacaaggcgatgatgtaagaattcgtttaagaaacataaaagacgaagttgttgtagccatgatgttcaat |
321 |
Q |
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| T |
4176450 |
ggaatatctgagggatccaattctggcacgacaaggcgatgatgtaagaattcgtttaagaaacataaaagacgaagttgttgtagccatgatgttcaat |
4176549 |
T |
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| Q |
322 |
tctgtttgtgtttgataggagtataacgttgagttgtagagtgatcgtg |
370 |
Q |
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| T |
4176550 |
tctgtttgtgtttgataggagtataacgttgagttgtagagtgatcgtg |
4176598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 4172199 - 4172341
Alignment:
| Q |
108 |
ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagcc |
207 |
Q |
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| T |
4172199 |
ctagagttgaaacctgtgaagggatagagcagttgcaaggcctgcaatgccaccacccacaatgacaacatgttccttttgga---ctgaagattgaacc |
4172295 |
T |
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| Q |
208 |
ttgattgttaatttggaatatctgagggatccaattctggcacgacaag |
256 |
Q |
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| T |
4172296 |
ttga---ttaatttggaacttctgagagatccaattctggtatgacaag |
4172341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 4172358 - 4172413
Alignment:
| Q |
285 |
cataaaagacgaagttgttgtagccatg---atgttcaattctgtttgtgtttgat |
337 |
Q |
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| T |
4172358 |
cataaaagacgaggttgttgtagccatggacatgttcaattcagattgtgtttgat |
4172413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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