View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_22 (Length: 388)
Name: NF6745_low_22
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 27 - 371
Target Start/End: Original strand, 47287385 - 47287730
Alignment:
| Q |
27 |
aaaaataagtttaatttatataatatattttaatttgaataaaatatcatcaaaagggttctcaattgtgaatggacacaaaatacaccaactgaaagca |
126 |
Q |
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| T |
47287385 |
aaaaaaaagtttaatttatataaaatattttaatttgaataaaatatcatcaaaagggttctcaattgtgaatggacacaaaatacaccaactgaaagca |
47287484 |
T |
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| Q |
127 |
aatcccgctttctgcaaacaagcaggaatggctatagcaacctattatgggaagaagatcttgttgtgccatttttgtgtgtatagaaatcatattcata |
226 |
Q |
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| T |
47287485 |
aatcccgctttctgcaaacaagcaggaatggctatagcaacctattatgggaagaagatcttgttgtgccatttttgtgtgtatagaaatcatattcata |
47287584 |
T |
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| Q |
227 |
ggcatgccatgtgctccctttgattgatggctatg-nnnnnnnnnagtttgattttgtttaaagggaattgaagcaaagtgtttgtctgaccatgcatag |
325 |
Q |
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| T |
47287585 |
gtcatgccatgtgctccctttgattgatggctatgttttttttttagtttgattttgtttaaagggaattgaagcaaagtgtttgtctgaccatgcatag |
47287684 |
T |
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| Q |
326 |
aggtatgattgttaatcgttggtttttaatattgcaggagttggct |
371 |
Q |
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| T |
47287685 |
aggtatgattgttaatcgttggtttttagtattgcaggagttggct |
47287730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 35431019 - 35431053
Alignment:
| Q |
187 |
ttgttgtgccatttttgtgtgtatagaaatcatat |
221 |
Q |
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| T |
35431019 |
ttgttgtgccatttttgtgtgtatagagatcatat |
35431053 |
T |
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