View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_23 (Length: 381)
Name: NF6745_low_23
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 43 - 363
Target Start/End: Complemental strand, 45540095 - 45539775
Alignment:
| Q |
43 |
tcatgtcaaagtttaaggaaaaacacattttgtttcgaactaacaaactttcaaactcatttgaatttgaaatgcatgtattatactctgattcaagtaa |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45540095 |
tcatgtcaaagtttaaggaaaaacacattttgtttcgaactaacaaactttcaaactcatttgaatttgaaatgcatgtattatactctgattcaagtag |
45539996 |
T |
|
| Q |
143 |
agatgaaaaataaaaatttcaaatgacttgtaatttagagagcatacactaactttacataaccaaataagataaacaataaaaaggtaatcaaggaaaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45539995 |
agatgaaaaataaaaatttcaaatgacttgtaatttagatagcatacactaactttacataaccatataagataaacaataaaaaggtaatcaaggaaaa |
45539896 |
T |
|
| Q |
243 |
gaggtgcgaaactccatcacgacaagaaaaatactaaacttgcatacaaacacactcaaatatatatgtcaataactataaacaaattcacacaagcttc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45539895 |
gaggtgcgaaactccatcacgacaagaaaaatactaaacttgcatacaaacacactcaaatatatatgtcaataactataaacaaattcacacaagcttc |
45539796 |
T |
|
| Q |
343 |
caattttttcatgccctttat |
363 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
45539795 |
caattctttcatgccctttat |
45539775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University