View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_25 (Length: 378)
Name: NF6745_low_25
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 19097274 - 19096928
Alignment:
| Q |
17 |
acatcatgtgctccatcaaatatggaaactgccaatgcttacctctataaattctcatctaaaaattttaagcctcttatgatgattatgtaattgggat |
116 |
Q |
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| T |
19097274 |
acatcatgtgctccatcaaatatggaaactgccaatgcttacctctataaattctcatctaaaaattttaagcctcttatgatgattatgtaattgggat |
19097175 |
T |
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| Q |
117 |
caacagaggattaccagccggtggacccctttgtcttcgaggccttcgagttgttttaccccaacctgttaggctcctatcctccaacgccacttcaatg |
216 |
Q |
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| T |
19097174 |
caacagagaattaccagccggtggacccctttgtcttcgaggccttcgagttgttttaccccaacctgttaggctcctatcctccaacgccacttcaatg |
19097075 |
T |
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| Q |
217 |
ttattgagttgctgcgtcaacggagtgctgctttcattggtgacaacaggtggtgaggaagaaggggtaacctgtgtttgccgcctcggcctcccccttc |
316 |
Q |
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| T |
19097074 |
ttattgagttgctgcgtcaacggagtgctgctttcattggtgacaacaggtggtgaggaagaaggggtaacctgtgtttgccgcctcggcctcccccttc |
19096975 |
T |
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| Q |
317 |
ccctcccactaccgttcctagtcgagcttcttctagttaatcctgat |
363 |
Q |
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| T |
19096974 |
ccctcccactaccgttcctagtcgagcttcttctagttaatcctgat |
19096928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 32149164 - 32149098
Alignment:
| Q |
148 |
tgtcttcgaggccttcgagttgttttaccccaacctgttaggctcctatcctccaacgccacttcaa |
214 |
Q |
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| T |
32149164 |
tgtctacggggccttcttgttgtctttccccaacctgttaggcttctatcctccaaacccacttcaa |
32149098 |
T |
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