View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_28 (Length: 338)
Name: NF6745_low_28
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_28 |
 | |
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| [»] chr1 (11 HSPs) |
| |
|
| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 9299640 - 9299977
Alignment:
| Q |
1 |
tcatttccattttcgtatatttttctgagaactattaaggatattttaaatattaaatttacaggtgtaataatcggttcaactttgctagtgcttatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
9299640 |
tcatttccattttcgtatatttttctgagaactgttaaggatattttaaatattaaatttacaggtgtaataatcggtttaactttgctagtgcttatgc |
9299739 |
T |
|
| Q |
101 |
tcggtgctattattcgaattcatcgtcatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattatcaggctttaaagccaac |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
9299740 |
tcggtgctattattcgaattcatcgccatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattataaggctttaaagccaac |
9299839 |
T |
|
| Q |
201 |
cagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatcaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9299840 |
cagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatcaagt |
9299939 |
T |
|
| Q |
301 |
caaattcaagttgctgttaagatgctcaataacgctga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9299940 |
caaattcaagttgctgttaagatgctcaataacgctga |
9299977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 335
Target Start/End: Complemental strand, 9257994 - 9257736
Alignment:
| Q |
76 |
ggttcaactttgctagtgcttatgctcggtgctattattcgaattcatcgtcatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttga |
175 |
Q |
| |
|
||||||||||| ||||||||| | || ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9257994 |
ggttcaactttactagtgcttgtacttggtgctattgttcgaattcatcgccatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttga |
9257895 |
T |
|
| Q |
176 |
aggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagc |
275 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
9257894 |
aggattataaggctttaaagccaaccagattctcctatgctgacatcaagagaattacaaacaaatttaaggataagatcggagaaggagctcaaggagc |
9257795 |
T |
|
| Q |
276 |
tgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgctcaataacgc |
335 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
9257794 |
tgtttacaaagg-caattatcaagtcaaattctagttgctgttaagatgatcaataacgc |
9257736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 63 - 338
Target Start/End: Complemental strand, 9467233 - 9466958
Alignment:
| Q |
63 |
aggtgtaataatcggttcaactttgctagtgcttatgctcggtgctattattcgaattcatcgtcatttcaagatgaaaggcgaagatcatgaaagaatc |
162 |
Q |
| |
|
||||| ||| |||||||||||||||||| | ||| | ||||| | ||| |||||||| |||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
9467233 |
aggtggaatcatcggttcaactttgctattacttgttctcggcaccattgttcgaatttatcgctatttcaagatgaaaggcgaagatcatgtaagaatc |
9467134 |
T |
|
| Q |
163 |
gaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaag |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9467133 |
gaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaag |
9467034 |
T |
|
| Q |
263 |
gagctcatggagctgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgctcaataacgctga |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
9467033 |
gagctcatggagctgtttacaaaggtaaattgtcaagccaaattctcgttgccgttaagatgctcaataacactga |
9466958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 9364070 - 9364238
Alignment:
| Q |
128 |
atttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagag |
227 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||| ||||||| |
|
|
| T |
9364070 |
attttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttaaagag |
9364169 |
T |
|
| Q |
228 |
aattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatc |
296 |
Q |
| |
|
||||||||| |||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
9364170 |
aattacaaataaatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatc |
9364238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 9337211 - 9337379
Alignment:
| Q |
128 |
atttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattatcag-gctttaaagccaaccagattctcctatgctgacataaaga |
226 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||| || ||||| ||||| ||| |||||| |
|
|
| T |
9337211 |
attttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggatta-cagtgctttaaagccaactaggttctcttatgcagacttaaaga |
9337309 |
T |
|
| Q |
227 |
gaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatc |
296 |
Q |
| |
|
|||||||||| |||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
9337310 |
gaattacaaataaatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatc |
9337379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 128 - 296
Target Start/End: Complemental strand, 9242974 - 9242806
Alignment:
| Q |
128 |
atttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagag |
227 |
Q |
| |
|
|||| ||||||||| | ||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||||||||||| |
|
|
| T |
9242974 |
attttaagatgaaaagtgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacataaagag |
9242875 |
T |
|
| Q |
228 |
aattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatc |
296 |
Q |
| |
|
||||||||| |||||| | |||||||| || ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
9242874 |
aattacaaataaatttgaagataagataggcgaagggactcatggagctgtttataaaggtaaattatc |
9242806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 8962012 - 8962181
Alignment:
| Q |
163 |
gaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaag |
262 |
Q |
| |
|
||||||||||||||||||||| | || | ||||||||| ||||| || ||||| || || ||||||||||| | |||| ||||| ||| | || |||| |
|
|
| T |
8962012 |
gaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaagagaattactgatcaattcaaggaaaagctgggcgaag |
8962111 |
T |
|
| Q |
263 |
gagctcatggagctgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgctcaataa |
332 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||| ||||| |
|
|
| T |
8962112 |
gagctcatggagctgtctacaaaggtaaattatcgagtcaaattcttgttgctgtgaagatgcttaataa |
8962181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 8939085 - 8939248
Alignment:
| Q |
163 |
gaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaag |
262 |
Q |
| |
|
|||||||||||||||||||| | || | ||||||||| ||||| || ||||| || || |||||||||||| | |||| || || ||| | || |||| |
|
|
| T |
8939085 |
gaaaactttttgaaggattacgaagcgtcaaagccaacaagattttcttatgcagatatcaagagaattacagatcaattcaaagaaaagctaggggaag |
8939184 |
T |
|
| Q |
263 |
gagctcatggagctgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgct |
326 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||||| ||||| || |||||||| |
|
|
| T |
8939185 |
gagctcatggagctgtctataaaggtaaattatcgagtcaaattcttgttgccgtgaagatgct |
8939248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 8926659 - 8926822
Alignment:
| Q |
163 |
gaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaag |
262 |
Q |
| |
|
||||||||||||||||||||| | || | ||||||||| ||||| || ||||| || || ||||||||||| | | || || || ||| | || |||| |
|
|
| T |
8926659 |
gaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgcagatatcaagagaattacggatcagttcaaagaaaagctaggcgaag |
8926758 |
T |
|
| Q |
263 |
gagctcatggagctgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgct |
326 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | ||||||| |||||||| |||||||| |
|
|
| T |
8926759 |
gagctcatggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagatgct |
8926822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 9438129 - 9438005
Alignment:
| Q |
202 |
agattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatcaagtc |
301 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| || |||| ||| || | || |||||||||||||| || |||| ||||||||||||||| | | |
|
|
| T |
9438129 |
agattctcttatgctgatataaagaggattacaaataattttagggaagagttaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatg |
9438030 |
T |
|
| Q |
302 |
aaattcaagttgctgttaagatgct |
326 |
Q |
| |
|
|||||| || ||||| |||||||| |
|
|
| T |
9438029 |
aaattcttgtggctgtgaagatgct |
9438005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 9421046 - 9420922
Alignment:
| Q |
202 |
agattctcctatgctgacataaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatcaagtc |
301 |
Q |
| |
|
|||||||| |||| ||| |||||||| |||||||| || |||| ||| || | || |||||||||||||| || |||| ||||||||||||||| | | |
|
|
| T |
9421046 |
agattctcttatgttgatataaagaggattacaaataattttagggaagagttaggtgaaggagctcatggtgcagttttcaaaggtaaattatctaatg |
9420947 |
T |
|
| Q |
302 |
aaattcaagttgctgttaagatgct |
326 |
Q |
| |
|
|||||| || ||||| |||||||| |
|
|
| T |
9420946 |
aaattcttgtggctgtgaagatgct |
9420922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 53 - 333
Target Start/End: Original strand, 9171095 - 9171375
Alignment:
| Q |
53 |
ttaaatttacaggtgtaataatcggttcaactttgctagtgcttatgctcggtgctattattcgaattcatcgtcatttcaagatgaaaggcgaagatca |
152 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| | | |||| ||||||||||||||||||||||||||| |
|
|
| T |
9171095 |
ttaaatttgcaggtgtaataattggttcaactttgctagtgcttgtgctcggtgctattgttcaagtccatcatcatttcaagatgaaaggcgaagatca |
9171194 |
T |
|
| Q |
153 |
tgaaagaatcgaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaaatttaaggataag |
252 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9171195 |
taaaagaatcgaaaactttttgaaggattacaaggctttaaagccaaccagattctcctatgctgacataaagagaatcacaaataaatttaaggataag |
9171294 |
T |
|
| Q |
253 |
atcggagaaggagctcatggagctgtttacaaaggtaaattatcaagtcaaattcaagttgctgttaagatgctcaataac |
333 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||| |
|
|
| T |
9171295 |
ttaggcgaaggagctcatggagctgtttacaaaggtaaattatcaagccaaattctagttggtgttaagatgctaaataac |
9171375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 136 - 296
Target Start/End: Original strand, 1287 - 1447
Alignment:
| Q |
136 |
atgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaa |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||| | ||||||||||||| |
|
|
| T |
1287 |
atgaaaggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagaattacaa |
1386 |
T |
|
| Q |
236 |
acaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatc |
296 |
Q |
| |
|
| |||||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
1387 |
ataaatttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatc |
1447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 15910819 - 15910659
Alignment:
| Q |
136 |
atgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattatcaggctttaaagccaaccagattctcctatgctgacataaagagaattacaa |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||| | |||||| |||||| |
|
|
| T |
15910819 |
atgaaaggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagatttacaa |
15910720 |
T |
|
| Q |
236 |
acaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattatc |
296 |
Q |
| |
|
| |||||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
15910719 |
ataaatttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatc |
15910659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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