View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_32 (Length: 305)
Name: NF6745_low_32
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_32 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 1330030 - 1330335
Alignment:
| Q |
1 |
acacggctatcatggaacaccaaaaccgtgccaacatggcgctaaccgcagaccctacccccagctctgaaaacagaagca-ctaataacagcaactctc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1330030 |
acacggctatcatggaacaccaaaaccgtgccaacatggcgctaaccgcagaccctacccccagctctgaaaacagaagcaactaataacagcaactctc |
1330129 |
T |
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| Q |
100 |
cctagaatcataagcaaaacagtcnnnnnnnnccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacag |
199 |
Q |
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| T |
1330130 |
cctagaagcataagcaaaacagtaaaaaaaaaccagcagtaggagctgaaagcacccaccgacccacaaaaatctcctccacgacacacaccagcaacag |
1330229 |
T |
|
| Q |
200 |
cgctgtcaatatacacagaaactcgagaaaaaactccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330230 |
cgctgtcaatatacacagaaactcgagaaaaaactccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacact |
1330329 |
T |
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| Q |
300 |
ttagtt |
305 |
Q |
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|||||| |
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| T |
1330330 |
ttagtt |
1330335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 29083229 - 29083197
Alignment:
| Q |
248 |
aaggcatccttttgggttccaacaccattcata |
280 |
Q |
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| T |
29083229 |
aaggcattcttttgggttccaacaccattcata |
29083197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 14247259 - 14247531
Alignment:
| Q |
16 |
aacaccaaaaccgtgccaacatggcgctaaccgcagaccctacccccagctctgaaaacagaagcactaataacagcaactctccctagaatcataagca |
115 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||| || ||| |||||||| |
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| T |
14247259 |
aacaccaaaaccgtgccaaaatggcactaaccgcagaccctgcccccagctctgaaaacagaagcaataatgacagaaactctcgctggaagcataagca |
14247358 |
T |
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| Q |
116 |
aaacagtcnnnnnnnnccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacac |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
14247359 |
aaacagtcaaaaga--ccagcagtaggagctgacagcacccacggacccacataaaactcctccatgacacacaccagcaacagcgctgtcaatattcac |
14247456 |
T |
|
| Q |
216 |
agaaactcga-gaaaaaactccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaaca |
289 |
Q |
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||||||||| |||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
14247457 |
tgaaactcgaggaaaaacctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaaaca |
14247531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 282
Target Start/End: Original strand, 9850169 - 9850424
Alignment:
| Q |
31 |
ccaacatggcgctaaccgcagaccctacccccagctctgaaaacagaagcactaataacagcaactctccctagaatcataagcaaaacagtcnnnnnnn |
130 |
Q |
| |
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|||| |||||||||||| ||||||| ||||||||||||||||| |||| |||| || |||||||||||||||||| |||||| |||||| | |
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| T |
9850169 |
ccaaaatggcgctaaccacagaccccacccccagctctgaaaatagaatcacttatggcagcaactctccctagaagcataagtaaaacaatattaaaat |
9850268 |
T |
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| Q |
131 |
nc---cagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcga-g |
226 |
Q |
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||||||||||||||||||||||||||| || |||| |||||||||||||| || | |||||| |||||| ||||||| ||| ||||||||| | |
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| T |
9850269 |
aaaaacagcagtaggagctgacagcacccaccaacccacagaaaactcctccacggcatgtaacagcaatagcgctatcaatattcactgaaactcgagg |
9850368 |
T |
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| Q |
227 |
aaaaaactccaattatcaggtaaggcatccttttgggttccaacaccattcataga |
282 |
Q |
| |
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||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
9850369 |
aaaaaactccacttatcgcataaggcattcttttgggttccaacaccattcataga |
9850424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 7701528 - 7701561
Alignment:
| Q |
256 |
cttttgggttccaacaccattcatagaataaaca |
289 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
7701528 |
cttttgggttccaacatcattcatagaataaaca |
7701561 |
T |
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