View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_33 (Length: 298)
Name: NF6745_low_33
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 37201471 - 37201385
Alignment:
| Q |
23 |
tttagcacagttaagataaaataaaagccacacattaattaagcatataagaagctacataattagttagttgagagtgctatcttt |
109 |
Q |
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| T |
37201471 |
tttagcacagttaagataaagtaaaagccacacattaattaagcatataagaagctacatagtcagttagttgagatttctatcttt |
37201385 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 37216499 - 37216406
Alignment:
| Q |
23 |
tttagcacagttaagataaaataaaagccacacattaattaagcatataagaagctacataattagttagttgagagtgctatcttttcaaatataat |
120 |
Q |
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| T |
37216499 |
tttagcacagttaagataaaataagagccaca----aattaagcatataagaagctacatgattagttaattaagagagctatcttttcaaatataat |
37216406 |
T |
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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 7526819 - 7526725
Alignment:
| Q |
20 |
ccttttagcacagttaagataaaataaaagccacacattaattaagcatataagaagctacataattagttag-ttgagagtgctatcttttcaaatata |
118 |
Q |
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| T |
7526819 |
ccttttagcacagttaagataaaatgaaagccacaca----ttaagcatataa-aagctatataattagttagtttgagagtagtatcttttgaaatata |
7526725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 11462307 - 11462251
Alignment:
| Q |
210 |
aatgagtgggtgatttgtagggcatttcagaagagtttatcaagcaaaaagacatgt |
266 |
Q |
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| T |
11462307 |
aatgagtgggtgatttgcagggtatttaagaagagtttatcaggcaaaaagacatgt |
11462251 |
T |
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