View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_low_35 (Length: 284)

Name: NF6745_low_35
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_low_35
NF6745_low_35
[»] chr1 (8 HSPs)
chr1 (1-270)||(30807852-30808121)
chr1 (60-269)||(30799891-30800100)
chr1 (52-263)||(30783110-30783321)
chr1 (139-270)||(30744615-30744746)
chr1 (158-270)||(30766085-30766197)
chr1 (176-272)||(30793168-30793264)
chr1 (175-250)||(30739638-30739713)
chr1 (158-273)||(30758633-30758748)
[»] chr7 (1 HSPs)
chr7 (81-270)||(22014331-22014520)
[»] chr5 (1 HSPs)
chr5 (81-270)||(15282637-15282826)
[»] chr3 (1 HSPs)
chr3 (81-270)||(18158249-18158438)
[»] chr2 (1 HSPs)
chr2 (81-270)||(24224135-24224324)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 30807852 - 30808121
Alignment:
Q  1 catatctcttttacatcatcaaattcaatacatttttccttccaaaaaacttatttcatttaattctttggtgcctcaaatgatttcagcaccacttctg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30807852 catatctcttttacatcatcaaatacaatacatttttccttccaaaaaacttatttcatttaattctttggtgcctcaaatgatttcagcaccacgtctg 30807951  T
Q  101 tgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatcagtgatagcttgtgctggctc 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30807952 tgtcagcatatttgttaaagtagtgggaattgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatcagtgatagcttgtgctggctc 30808051  T
Q  201 tacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcaca 270  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30808052 tacgtaacaatcatctgaaggagctacaaaaaatgcaccagttgtacgagcatgacttgaatttgtcaca 30808121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 269
Target Start/End: Original strand, 30799891 - 30800100
Alignment:
Q  60 ttaattctttggtgcctcaaatgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaa 159  Q
    ||||||||||| |||| |||||||| | ||||| || || |||||| ||||||||||||||||||||||| ||||||| ||||||||||| |  ||| |     
T  30799891 ttaattctttgttgccccaaatgatgtaagcactacatcggtgtcaccatatttgttaaagtagtgggaactgaaatccttgtatttgaaaggtttgcac 30799990  T
Q  160 attggtggattatgttcatcagtgatagcttgtgctggctctac-gtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgactt 258  Q
    ||||||||||| ||||||||| ||| || ||||||||||||||| ||| |||||||||||||||||||   |||| ||||||||||| ||| | ||||||    
T  30799991 attggtggattgtgttcatcaatgaaagattgtgctggctctacagtg-caatcatctgaaggagctaagcaaaaagcagcagttgtgcgaccttgactt 30800089  T
Q  259 gaatttgtcac 269  Q
    | ||| |||||    
T  30800090 gcattggtcac 30800100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 263
Target Start/End: Original strand, 30783110 - 30783321
Alignment:
Q  52 tatttcatttaattctttggtgcctcaaatgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaagg 151  Q
    |||||||||||||||||||||||||||||||||||||||| ||  | || |||| ||  | |||||||| | ||      ||| || |||||||| || |    
T  30783110 tatttcatttaattctttggtgcctcaaatgatttcagcagcaggtatgagtcaccaagtgtgttaaagaattgcttgaggaactccttgtatttaaaag 30783209  T
Q  152 acttgaaaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagc 251  Q
    |||| ||||| ||| | || |  |||||||||| | ||| ||||||||||| | ||||||||||| | |||||||  ||||| ||||||| ||| ||||     
T  30783210 actttaaaataggttggttgttctcatcagtgagatcttctgctggctctatgagacaatcatctaatggagctatgaaaaaggcagcagatgtgcgagt 30783309  T
Q  252 atgacttgaatt 263  Q
    ||||||||||||    
T  30783310 atgacttgaatt 30783321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 30744615 - 30744746
Alignment:
Q  139 ttgtatttgaaggacttgaaaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcag 238  Q
    ||||||||| | |||||  |||| |||||||| ||||||||| ||| | ||| || ||| || | |  ||||||| |||| ||||||| |||||| ||||    
T  30744615 ttgtatttgtaagacttataaataggtggattgtgttcatcaatgagatcttttgttggttcaatgaaacaatcacctgatggagctataaaaaaggcag 30744714  T
Q  239 cagttgtacgagcatgacttgaatttgtcaca 270  Q
    ||||||||||||| |||  |||||||||||||    
T  30744715 cagttgtacgagcttgatctgaatttgtcaca 30744746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 30766085 - 30766197
Alignment:
Q  158 aaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgact 257  Q
    |||| |||||||| ||||||||| ||| | ||| || ||| || | |  ||||||| |||| ||||||| |||||| ||||||||||||||||| |||      
T  30766085 aaataggtggattgtgttcatcaatgagatcttttgttggttcaatgaaacaatcacctgatggagctataaaaaaggcagcagttgtacgagcttgatc 30766184  T
Q  258 tgaatttgtcaca 270  Q
    |||||||||||||    
T  30766185 tgaatttgtcaca 30766197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 30793168 - 30793264
Alignment:
Q  176 catcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcacaac 272  Q
    ||||| |||||||||||||||||| |||   ||||||| ||||||||||||   ||||||||||| |||| ||| | | | ||||||||||||||||    
T  30793168 catcaatgatagcttgtgctggctatacagtacaatcagctgaaggagctaggcaaaatgcagcacttgttcgaccttcatttgaatttgtcacaac 30793264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 30739638 - 30739713
Alignment:
Q  175 tcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgag 250  Q
    ||||||| || | ||||||||||||||| | ||||||||||||| |||||||  ||||| |||||| |||||||||    
T  30739638 tcatcagggagatcttgtgctggctctatgagacaatcatctgatggagctatgaaaaaggcagcacttgtacgag 30739713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 30758633 - 30758748
Alignment:
Q  158 aaattggtggattatgttcatcagtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgact 257  Q
    |||| |||||||| ||||||||| ||| | ||| || ||| || | |  ||||||| |||| ||||||| |||||| ||||||||||| ||||| ||       
T  30758633 aaataggtggattgtgttcatcaatgagatcttttgttggttcaatgaaacaatcacctgatggagctataaaaaaggcagcagttgtgcgagcttgttc 30758732  T
Q  258 tgaatttgtcacaact 273  Q
    ||||||||||||||||    
T  30758733 tgaatttgtcacaact 30758748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 22014520 - 22014331
Alignment:
Q  81 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 180  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22014520 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 22014421  T
Q  181 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcaca 270  Q
    |||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22014420 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcaca 22014331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 15282826 - 15282637
Alignment:
Q  81 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 180  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15282826 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 15282727  T
Q  181 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcaca 270  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15282726 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatggcttgaatttgtcaca 15282637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 18158438 - 18158249
Alignment:
Q  81 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 180  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18158438 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 18158339  T
Q  181 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcaca 270  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18158338 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatggcttgaatttgtcaca 18158249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 24224324 - 24224135
Alignment:
Q  81 tgatttcagcaccacttctgtgtcagcatatttgttaaagtagtgggaattgaaatctttgtatttgaaggacttgaaaattggtggattatgttcatca 180  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24224324 tgatttcagcaccacgtctgtgtcagcatatttgttaaagtagtgagagttgaaatccttgtatttgaaggacttgaaaattggtggattatgttcatca 24224225  T
Q  181 gtgatagcttgtgctggctctacgtgacaatcatctgaaggagctacaaaaaatgcagcagttgtacgagcatgacttgaatttgtcaca 270  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24224224 gtgatagcttgtgctggctcgacgttacaatcatccgaatgagctacaaaaaatgcagcagttgtacgagcatggcttgaatttgtcaca 24224135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University