View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_36 (Length: 278)
Name: NF6745_low_36
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 30274250 - 30274527
Alignment:
| Q |
1 |
caaacagttcataagcacatgtttaatcaagaatccaaaccaaacaaattattacatcaaagattactaaccaagtgtgcaataacatcacaatcacttc |
100 |
Q |
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| T |
30274250 |
caaacagttcataagcacatgtttaatcaagaatccaaaccaaacaaattattacatcaaagattactaaccaagtgtgcaataacatcacaatcacttc |
30274349 |
T |
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| Q |
101 |
cggttcggaatgtgtgattagacagctgtttcctgagagcttcatggttgtaaatctctccatttacctgattttccaataatgacagaatttaccaaca |
200 |
Q |
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| T |
30274350 |
ccgttcggaatgtgtgattagacagctgtttcctgagagcttcatggttgtaaatctctccatttacctgattttccaataatgacagaatttaccaaca |
30274449 |
T |
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| Q |
201 |
ttaaattagtaaagtactaacataatcattattgttatggacattcacatagagatgaacatcagatacgacaatgac |
278 |
Q |
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| T |
30274450 |
ttaaattagtaaagtactaacataatcattattgttatggacactcacatagacatgaacattagatacgacaatgac |
30274527 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 25967154 - 25967260
Alignment:
| Q |
65 |
tactaaccaagtgtgcaataacatcacaatcacttccggttcggaatgtgtgattagacagctgtttcctgagagcttcatggttgtaaatctctccatt |
164 |
Q |
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||||||||| |||||||||||||||||| |||| | || |||||| ||||||||| || ||||||||||| ||||||| ||||| ||||||||||| |
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| T |
25967154 |
tactaaccaggtgtgcaataacatcacagtcacattgtgtacggaatttgtgattaggcaattgtttcctgaggtcttcatgattgtagatctctccatt |
25967253 |
T |
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| Q |
165 |
tacctga |
171 |
Q |
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|||||| |
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| T |
25967254 |
cacctga |
25967260 |
T |
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